+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ws.jws2.jabaws2;
+import jalview.ws.uimodel.AlignAnalysisUIText;
+
import java.util.HashMap;
+import java.util.HashSet;
import compbio.data.msa.JABAService;
-import jalview.ws.jws2.AAConClient;
-import jalview.ws.jws2.RNAalifoldClient;
-import jalview.ws.uimodel.AlignAnalysisUIText;
-
public class Jws2InstanceFactory
{
private static HashMap<String, AlignAnalysisUIText> aaConGUI;
+
+ private static HashSet<String> ignoreGUI;
+
private static String category_rewrite(String cat_name)
{
- return (cat_name != null && cat_name.equals("Prediction")) ? "Secondary Structure Prediction" : cat_name;
+ return (cat_name != null && cat_name.equals("Prediction"))
+ ? "Secondary Structure Prediction"
+ : cat_name;
}
+
private static void init()
{
if (aaConGUI == null)
{
- aaConGUI = new HashMap<String, AlignAnalysisUIText>();
+ aaConGUI = new HashMap<>();
aaConGUI.put(compbio.ws.client.Services.AAConWS.toString(),
- AAConClient.getAlignAnalysisUITest());
+ AAConClient.getAlignAnalysisUIText());
aaConGUI.put(compbio.ws.client.Services.RNAalifoldWS.toString(),
- RNAalifoldClient.getAlignAnalysisUITest());
+ RNAalifoldClient.getAlignAnalysisUIText());
+ // ignore list for JABAWS services not supported in jalview ...
+ ignoreGUI = new HashSet<>();
}
}
/**
+ * exclusion list to avoid creating GUI elements for services we don't fully
+ * support
+ *
+ * @param serviceType
+ * @return
+ */
+ public static boolean ignoreService(String serviceType)
+ {
+ init();
+ return (ignoreGUI.contains(serviceType.toString()));
+ }
+
+ /**
* construct a service instance and configure it with any additional
* properties needed so Jalview can access it correctly
*
JABAService service)
{
init();
- Jws2Instance svc = new Jws2Instance(jwsservers, serviceType, category_rewrite(name),
- description, service);
-
- svc.aaui = aaConGUI.get(serviceType.toString());
+ Jws2Instance svc = new Jws2Instance(jwsservers, serviceType,
+ category_rewrite(name), description, service);
+ svc.setAlignAnalysisUI(aaConGUI.get(serviceType.toString()));
return svc;
}