JAL-3285 code changes to HMMER colour schemes not included in merge

[jalview.git] / src / jalview / ws / params / OptionI.java

diff --git a/src/jalview/ws/params/OptionI.java b/src/jalview/ws/params/OptionI.java
index 59ba079..af8ae27 100644 (file)
--- a/src/jalview/ws/params/OptionI.java
+++ b/src/jalview/ws/params/OptionI.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.params;
 
 import java.net.URL;
@@ -5,17 +25,49 @@ import java.util.List;
 
 public interface OptionI extends ArgumentI
 {
-
+  /**
+   * Answers a URL with further details for this option, or null if none is
+   * known
+   * 
+   * @return
+   */
   URL getFurtherDetails();
 
+  /**
+   * Answers true if the option is mandatory (a value must be chosen), false if
+   * it is optional
+   * 
+   * @return
+   */
   boolean isRequired();
 
+  /**
+   * Answers the description of the option
+   * 
+   * @return
+   */
   String getDescription();
 
+  /**
+   * Answers a list of possible values that may be chosen for the option (or
+   * null if not applicable)
+   * 
+   * @return
+   */
   List<String> getPossibleValues();
 
-  OptionI copy();
-
-
+  /**
+   * Answers a list of display names corresponding to the possible values that
+   * may be chosen for the option (or null if not applicable)
+   * 
+   * @return
+   */
+  List<String> getDisplayNames();
 
+  /**
+   * Answers a new Option with a copy of the settings of this one
+   * 
+   * @return
+   */
+  OptionI copy();
 }