Merge branch 'develop' into features/JAL-2446NCList

[jalview.git] / src / jalview / ws / rest / params / SeqVector.java

diff --git a/src/jalview/ws/rest/params/SeqVector.java b/src/jalview/ws/rest/params/SeqVector.java
index ff33bb5..55ca3ff 100644 (file)
--- a/src/jalview/ws/rest/params/SeqVector.java
+++ b/src/jalview/ws/rest/params/SeqVector.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -50,8 +50,7 @@ public class SeqVector extends InputType
 
   public SeqVector()
   {
-    super(new Class[]
-    { AlignmentI.class });
+    super(new Class[] { AlignmentI.class });
   }
 
   @Override
@@ -66,7 +65,7 @@ public class SeqVector extends InputType
       {
         idvector.append(sep);
       }
-      idvector.append(seq.getSequence());
+      idvector.append(seq.getSequenceAsString());
     }
     return new StringBody(idvector.toString());
   }
@@ -108,8 +107,8 @@ public class SeqVector extends InputType
         return true;
       } catch (Exception x)
       {
-        warnings.append("Invalid molecule type '" + val
-                + "'. Must be one of (");
+        warnings.append(
+                "Invalid molecule type '" + val + "'. Must be one of (");
         for (molType v : molType.values())
         {
           warnings.append(" " + v);