2.5.1 release branding

[jalview.git] / src / jalview / ws / seqfetcher / ASequenceFetcher.java

diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index 8a8cf44..7f93cab 100644 (file)
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -1,20 +1,19 @@
 /*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)\r
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)\r
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
  * \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
+ * This file is part of Jalview.\r
  * \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
- * GNU General Public License for more details.\r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
  * \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE.  See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.\r
  */\r
 package jalview.ws.seqfetcher;\r
 \r
@@ -211,8 +210,8 @@ public class ASequenceFetcher
    * Retrieve an instance of the proxy for the given source\r
    * \r
    * @param db\r
-   *                database source string TODO: add version string/wildcard for\r
-   *                retrieval of specific DB source/version combinations.\r
+   *          database source string TODO: add version string/wildcard for\r
+   *          retrieval of specific DB source/version combinations.\r
    * @return an instance of DbSourceProxy for that db.\r
    */\r
   public DbSourceProxy getSourceProxy(String db)\r
@@ -226,11 +225,10 @@ public class ASequenceFetcher
    * dbrefsource\r
    * \r
    * @param dbSourceProxy\r
-   *                reference for class implementing\r
-   *                jalview.ws.seqfetcher.DbSourceProxy\r
+   *          reference for class implementing\r
+   *          jalview.ws.seqfetcher.DbSourceProxy\r
    * @throws java.lang.IllegalArgumentException\r
-   *                 if class does not implement\r
-   *                 jalview.ws.seqfetcher.DbSourceProxy\r
+   *           if class does not implement jalview.ws.seqfetcher.DbSourceProxy\r
    */\r
   protected void addDBRefSourceImpl(Class dbSourceProxy)\r
           throws java.lang.IllegalArgumentException\r
@@ -297,4 +295,40 @@ public class ASequenceFetcher
     return false;\r
   }\r
 \r
+  /**\r
+   * select sources which are implemented by instances of the given class\r
+   * \r
+   * @param class that implements DbSourceProxy\r
+   * @return null or vector of source names for fetchers\r
+   */\r
+  public String[] getDbInstances(Class class1)\r
+  {\r
+    if (!jalview.ws.seqfetcher.DbSourceProxy.class.isAssignableFrom(class1))\r
+    {\r
+      throw new Error(\r
+              "Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given '"\r
+                      + class1 + "')");\r
+    }\r
+    if (FETCHABLEDBS == null)\r
+    {\r
+      return null;\r
+    }\r
+    String[] sources = null;\r
+    Vector src = new Vector();\r
+    Enumeration dbs = FETCHABLEDBS.keys();\r
+    while (dbs.hasMoreElements())\r
+    {\r
+      String dbn = (String) dbs.nextElement();\r
+      DbSourceProxy dbp = (DbSourceProxy) FETCHABLEDBS.get(dbn);\r
+      if (class1.isAssignableFrom(dbp.getClass()))\r
+      {\r
+        src.addElement(dbn);\r
+      }\r
+    }\r
+    if (src.size() > 0)\r
+    {\r
+      src.copyInto(sources = new String[src.size()]);\r
+    }\r
+    return sources;\r
+  }\r
 }\r