Merge branch 'develop' into features/JAL-2295setChimeraAttributes

[jalview.git] / src / jalview / ws / sifts / SiftsClient.java

diff --git a/src/jalview/ws/sifts/SiftsClient.java b/src/jalview/ws/sifts/SiftsClient.java
index 5bd0b89..37388d3 100644 (file)
--- a/src/jalview/ws/sifts/SiftsClient.java
+++ b/src/jalview/ws/sifts/SiftsClient.java
@@ -226,6 +226,10 @@ public class SiftsClient implements SiftsClientI
           return new File(siftsFileName);
         }
       }
+      else
+      {
+        return siftsFile;
+      }
     }
     try
     {
@@ -1019,7 +1023,7 @@ public class SiftsClient implements SiftsClientI
         {
           if ((i + (j * len)) < seqRes.length())
           {
-            boolean sameChar = Comparison.compareChars(
+            boolean sameChar = Comparison.isSameResidue(
                     seqRes.charAt(i + (j * len)),
                     strRes.charAt(i + (j * len)), false);
             if (sameChar