|| seqCoordSys == CoordinateSys.UNIPROT)
{
char resCharCode = ResidueProperties
- .getSingleCharacterCode(residue.getDbResName());
+ .getSingleCharacterCode(ResidueProperties
+ .getCanonicalAminoAcid(residue.getDbResName()));
resNumMap.put(currSeqIndex, String.valueOf(resCharCode));
}
else