import javax.xml.stream.XMLInputFactory;
import javax.xml.stream.XMLStreamReader;
-import MCview.Atom;
-import MCview.PDBChain;
+import mc_view.Atom;
+import mc_view.PDBChain;
public class SiftsClient implements SiftsClientI
{
++nonObservedShiftIndex;
}
}
+ if (currSeqIndex == UNASSIGNED)
+ {
+ // change in logic - unobserved residues with no currSeqIndex
+ // corresponding are still counted in both nonObservedShiftIndex and
+ // pdbeIndex...
+ continue;
+ }
// if (currSeqIndex >= seq.getStart() && currSeqIndex <= seqlength) //
// true
// numbering