package jalview.ws.uimodel;
-
+import jalview.bin.Cache;
import jalview.datamodel.SequenceI;
import jalview.ws.dbsources.PDBRestClient.PDBDocField;
private boolean allowEmptySequence;
+ private boolean allowUnpublishedEntries = Cache.getDefault(
+ "ALLOW_UNPUBLISHED_PDB_QUERYING", false);
+
+ private boolean facet;
+
+ private String facetPivot;
+
+ private int facetPivotMinCount;
+
private int responseSize;
private boolean isSortAscending;
- private Collection<PDBDocField> wantedFields;// = new
- // Collection<PDBDocField>();
+ private Collection<PDBDocField> wantedFields;
public String getFieldToSearchBy()
{
public String getQuery()
{
return fieldToSearchBy + searchTerm
- + (isAllowEmptySeq() ? "" : " AND molecule_sequence:['' TO *]");
+ + (isAllowEmptySeq() ? "" : " AND molecule_sequence:['' TO *]")
+ + (isAllowUnpublishedEntries() ? "" : " AND status:REL");
}
+ @Override
public String toString()
{
return "Query : " + getQuery() + " sort field: " + fieldToSortBy
+ " isAsc: " + isAscending() + " Associated Seq : "
+ associatedSequence;
}
+
+ public boolean isAllowUnpublishedEntries()
+ {
+ return allowUnpublishedEntries;
+ }
+
+ public void setAllowUnpublishedEntries(boolean allowUnpublishedEntries)
+ {
+ this.allowUnpublishedEntries = allowUnpublishedEntries;
+ }
+
+ public boolean isFacet()
+ {
+ return facet;
+ }
+
+ public void setFacet(boolean facet)
+ {
+ this.facet = facet;
+ }
+
+ public String getFacetPivot()
+ {
+ return facetPivot;
+ }
+
+ public void setFacetPivot(String facetPivot)
+ {
+ this.facetPivot = facetPivot;
+ }
+
+ public int getFacetPivotMinCount()
+ {
+ return facetPivotMinCount;
+ }
+
+ public void setFacetPivotMinCount(int facetPivotMinCount)
+ {
+ this.facetPivotMinCount = facetPivotMinCount;
+ }
}