import java.util.Collection;
import java.util.Objects;
-import javax.swing.DefaultListModel;
import javax.swing.table.DefaultTableModel;
import org.json.simple.JSONObject;
this.searchSummary = searchSummary;
}
- /**
- * Convenience method to obtain a List model for a given summary list
- *
- * @param summariesList
- * the summary list which contains the data for generating the lists
- * data
- * @return the list model generated for the search summary
- */
- public static DefaultListModel<PDBResponseSummary> getListModel(
- Collection<PDBResponseSummary> summariesList)
- {
- DefaultListModel<PDBResponseSummary> defaultListModel = new DefaultListModel<PDBResponseSummary>();
- for (PDBResponseSummary summaryList : summariesList)
- {
- defaultListModel.addElement(summaryList);
- }
- return defaultListModel;
- }
/**
- * Convenience method to obtain a Table model for a given summary List and
- * request
+ * Convenience method to obtain a Table model for a given summary List based
+ * on the request parameters
*
* @param request
* the PDBRestRequest object which holds useful information for
public static DefaultTableModel getTableModel(PDBRestRequest request,
Collection<PDBResponseSummary> summariesList)
{
- DefaultTableModel model = new DefaultTableModel();
-
+ DefaultTableModel tableModel = new DefaultTableModel()
+ {
+ @Override
+ public boolean isCellEditable(int row, int column)
+ {
+ return false;
+ }
+ };
if (request.getAssociatedSequence() != null)
{
- model.addColumn("Sequence");
+ tableModel.addColumn("Sequence"); // Create sequence column header if
+ // exists in the request
}
for (PDBDocField field : request.getWantedFields())
{
- model.addColumn(field.getName());
+ tableModel.addColumn(field.getName()); // Create sequence column header if
+ // exists in the request
}
for (PDBResponseSummary res : summariesList)
{
- model.addRow(res.getSummaryData());
+ tableModel.addRow(res.getSummaryData()); // Populate table rows with
+ // summary list
}
- return model;
+
+ return tableModel;
}
/**
* Model for a unique response summary
*
- * @author tcnofoegbu
- *
*/
public class PDBResponseSummary
{
private String pdbId;
- private String concatenatedSummaryData;
-
- private String[] summaryData;
+ private String[] summaryRowData;
private String associatedSequence;
- private int width = 480;
-
- public PDBResponseSummary(JSONObject doc, PDBRestRequest request)
+ public PDBResponseSummary(JSONObject pdbJsonDoc, PDBRestRequest request)
{
- StringBuilder summaryBuilder = new StringBuilder();
Collection<PDBDocField> diplayFields = request.getWantedFields();
String associatedSeq = request.getAssociatedSequence();
int colCounter = 0;
- summaryData = new String[(associatedSeq != null) ? diplayFields
+ summaryRowData = new String[(associatedSeq != null) ? diplayFields
.size() + 1 : diplayFields.size()];
if (associatedSeq != null)
{
- this.associatedSequence = (associatedSeq.length() > 18) ? associatedSeq
- .substring(0, 18) : associatedSeq;
- summaryData[0] = associatedSequence;
+ this.associatedSequence = associatedSeq;
+ summaryRowData[0] = associatedSequence;
colCounter = 1;
}
for (PDBDocField field : diplayFields)
{
- if (field.equals(PDBDocField.PDB_ID)
- && doc.get(PDBDocField.PDB_ID.getCode()) != null)
+ String fieldData = (pdbJsonDoc.get(field.getCode()) == null) ? ""
+ : pdbJsonDoc
+ .get(field.getCode()).toString();
+ if (field.equals(PDBDocField.PDB_ID))
{
- this.pdbId = doc.get(PDBDocField.PDB_ID.getCode()).toString();
- summaryData[colCounter++] = this.pdbId;
+ this.pdbId = fieldData;
+ summaryRowData[colCounter++] = this.pdbId;
}
else
{
- String value = (doc.get(field.getCode()) == null) ? "" : doc.get(
- field.getCode()).toString();
- summaryBuilder.append(field.getName()).append(": ").append(value)
- .append(" | ");
- summaryData[colCounter++] = value;
+ summaryRowData[colCounter++] = fieldData;
}
}
- this.concatenatedSummaryData = summaryBuilder.toString();
- summaryBuilder = null;
}
public String getPdbId()
this.pdbId = pdbId;
}
- public String getConcatenatedSummaryData()
- {
- return concatenatedSummaryData;
- }
-
- public void setConcatenatedSummaryData(String concatenatedSummaryData)
- {
- this.concatenatedSummaryData = concatenatedSummaryData;
- }
-
public String[] getSummaryData()
{
- return summaryData;
+ return summaryRowData;
}
public void setSummaryData(String[] summaryData)
{
- this.summaryData = summaryData;
+ this.summaryRowData = summaryData;
}
+ /**
+ * Returns a string representation of this object;
+ */
+ @Override
public String toString()
{
- StringBuilder html = new StringBuilder();
- html.append("<html><div style=\"width:" + width
- + "; word-wrap: break-word; border-bottom-style: dotted;\"> ");
- html.append(concatenatedSummaryData);
- html.append("</div></html>");
- return html.toString();
+ StringBuilder summaryFieldValues = new StringBuilder();
+ for (String summaryField : summaryRowData)
+ {
+ summaryFieldValues.append(summaryField).append("\t");
+ }
+ return summaryFieldValues.toString();
}
+ /**
+ * Returns hash code value for this object
+ */
@Override
public int hashCode()
{
- return Objects.hash(this.pdbId, this.concatenatedSummaryData);
+ return Objects.hash(this.pdbId, this.toString());
}
+ /**
+ * Indicates whether some object is equal to this one
+ */
@Override
- public boolean equals(Object other)
+ public boolean equals(Object that)
{
- if (!(other instanceof PDBResponseSummary))
+ if (!(that instanceof PDBResponseSummary))
{
return false;
}
-
- PDBResponseSummary that = (PDBResponseSummary) other;
-
- // Custom equality check here.
- return this.pdbId.equals(that.pdbId)
- && this.concatenatedSummaryData
- .equals(that.concatenatedSummaryData);
+ PDBResponseSummary another = (PDBResponseSummary) that;
+ return this.toString().equals(another.toString());
}
}