JAL-3878 Add RNAalifold service discovery.

[jalview.git] / src / jalview / ws2 / operations / AnnotationOperation.java

diff --git a/src/jalview/ws2/operations/AnnotationOperation.java b/src/jalview/ws2/operations/AnnotationOperation.java
index c1d2c7e..f927b2b 100644 (file)
--- a/src/jalview/ws2/operations/AnnotationOperation.java
+++ b/src/jalview/ws2/operations/AnnotationOperation.java
@@ -48,6 +48,10 @@ public class AnnotationOperation implements Operation
 
   boolean interactive = false;
 
+  private boolean isProtOperation = true;
+
+  private boolean isNucOperation = true;
+
   /*
    * Is it fine to get rid of AlignAnalysisUIText?
    */
@@ -67,7 +71,7 @@ public class AnnotationOperation implements Operation
   {
     return service.getName();
   }
-  
+
   @Override
   public String getDescription()
   {
@@ -85,13 +89,13 @@ public class AnnotationOperation implements Operation
   {
     return service.getHostName();
   }
-  
+
   @Override
   public boolean hasParameters()
   {
     return service.hasParameters();
   }
-  
+
   @Override
   public ParamDatastoreI getParamStore()
   {
@@ -119,13 +123,23 @@ public class AnnotationOperation implements Operation
   @Override
   public boolean isProteinOperation()
   {
-    return true;
+    return isProtOperation;
+  }
+
+  public void setProteinOperation(boolean value)
+  {
+    isProtOperation = value;
   }
 
   @Override
   public boolean isNucleotideOperation()
   {
-    return true;
+    return isNucOperation;
+  }
+
+  public void setNucleotideOperation(boolean value)
+  {
+    isNucOperation = value;
   }
 
   @Override
@@ -168,36 +182,4 @@ public class AnnotationOperation implements Operation
     return new AnnotationMenuBuilder(this);
   }
 
-
-  private CompletionStage<List<ArgumentI>> openEditParamsDialog(
-      WebServiceI service, WsParamSetI preset, List<ArgumentI> arguments)
-  {
-    WsJobParameters jobParams;
-    if (preset == null && arguments != null && arguments.size() > 0)
-      jobParams = new WsJobParameters(service.getParamStore(), preset,
-          arguments);
-    else
-      jobParams = new WsJobParameters(service.getParamStore(), preset,
-          null);
-    if (preset != null)
-    {
-      jobParams.setName(MessageManager.getString(
-          "label.adjusting_parameters_for_calculation"));
-    }
-    var stage = jobParams.showRunDialog();
-    return stage.thenApply((startJob) -> {
-      if (startJob)
-      {
-        if (jobParams.getPreset() == null)
-          return jobParams.getJobParams();
-        else
-          return jobParams.getPreset().getArguments();
-      }
-      else
-      {
-        return null;
-      }
-    });
-  }
-
 }