//
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
-// See https://eclipse-ee4j.github.io/jaxb-ri
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2022.02.07 at 04:45:21 PM GMT
+// Generated on: 2023.05.13 at 06:58:42 PM BST
//
-
package jalview.xml.binding.embl;
import java.math.BigInteger;
import javax.xml.bind.annotation.XmlType;
import javax.xml.datatype.XMLGregorianCalendar;
-
/**
- * <p>Java class for EntryType complex type.
+ * <p>
+ * Java class for EntryType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>
+ * The following schema fragment specifies the expected content contained within
+ * this class.
*
- * <pre>
- * &lt;complexType name="EntryType"&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="secondaryAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="projectAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/&gt;
- * &lt;element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="keyword" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="reference" maxOccurs="unbounded" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/&gt;
- * &lt;element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="type" use="required"&gt;
- * &lt;simpleType&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
- * &lt;enumeration value="submission"/&gt;
- * &lt;enumeration value="book"/&gt;
- * &lt;enumeration value="article"/&gt;
- * &lt;enumeration value="patent"/&gt;
- * &lt;enumeration value="thesis"/&gt;
- * &lt;enumeration value="unpublished"/&gt;
- * &lt;/restriction&gt;
- * &lt;/simpleType&gt;
- * &lt;/attribute&gt;
- * &lt;attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="feature" maxOccurs="unbounded" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="taxon" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="lineage" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="taxon" maxOccurs="unbounded"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="qualifier" maxOccurs="unbounded" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="assembly" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="range" maxOccurs="unbounded"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="contig" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;choice maxOccurs="unbounded" minOccurs="0"&gt;
- * &lt;element name="range"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="gap"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/choice&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="sequence" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="entryVersion" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="dataClass" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="taxonomicDivision" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="moleculeType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="sequenceLength" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="topology" use="required"&gt;
- * &lt;simpleType&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
- * &lt;enumeration value="circular"/&gt;
- * &lt;enumeration value="linear"/&gt;
- * &lt;/restriction&gt;
- * &lt;/simpleType&gt;
- * &lt;/attribute&gt;
- * &lt;attribute name="firstPublic" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
- * &lt;attribute name="firstPublicRelease" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="lastUpdated" type="{http://www.w3.org/2001/XMLSchema}date" /&gt;
- * &lt;attribute name="lastUpdatedRelease" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
+ * <pre>
+ * <complexType name="EntryType">
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="secondaryAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="projectAccession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="description" type="{http://www.w3.org/2001/XMLSchema}string"/>
+ * <element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="keyword" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="reference" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/>
+ * <element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="type" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="submission"/>
+ * <enumeration value="book"/>
+ * <enumeration value="article"/>
+ * <enumeration value="patent"/>
+ * <enumeration value="thesis"/>
+ * <enumeration value="unpublished"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="feature" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="taxon" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="lineage" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="taxon" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="qualifier" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="assembly" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="range" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="contig" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <choice maxOccurs="unbounded" minOccurs="0">
+ * <element name="range">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="gap">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </choice>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="sequence" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="entryVersion" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="dataClass" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="taxonomicDivision" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="moleculeType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="sequenceLength" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="topology" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="circular"/>
+ * <enumeration value="linear"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="firstPublic" type="{http://www.w3.org/2001/XMLSchema}date" />
+ * <attribute name="firstPublicRelease" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="lastUpdated" type="{http://www.w3.org/2001/XMLSchema}date" />
+ * <attribute name="lastUpdatedRelease" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "EntryType", propOrder = {
- "secondaryAccession",
- "projectAccession",
- "description",
- "comment",
- "keyword",
- "reference",
- "xref",
- "feature",
- "assembly",
- "contig",
- "sequence"
-})
-public class EntryType {
-
- protected List<String> secondaryAccession;
- protected List<String> projectAccession;
+@XmlType(
+ name = "EntryType",
+ propOrder =
+ { "secondaryAccession", "projectAccession", "description", "comment",
+ "keyword", "reference", "xref", "feature", "assembly", "contig",
+ "sequence" })
+public class EntryType
+{
+
+ protected List<String> secondaryAccession;
+
+ protected List<String> projectAccession;
+
+ @XmlElement(required = true)
+ protected String description;
+
+ protected String comment;
+
+ protected List<String> keyword;
+
+ protected List<EntryType.Reference> reference;
+
+ protected List<XrefType> xref;
+
+ protected List<EntryType.Feature> feature;
+
+ protected EntryType.Assembly assembly;
+
+ protected EntryType.Contig contig;
+
+ protected String sequence;
+
+ @XmlAttribute(name = "accession", required = true)
+ protected String accession;
+
+ @XmlAttribute(name = "version", required = true)
+ protected BigInteger version;
+
+ @XmlAttribute(name = "entryVersion")
+ protected BigInteger entryVersion;
+
+ @XmlAttribute(name = "dataClass", required = true)
+ protected String dataClass;
+
+ @XmlAttribute(name = "taxonomicDivision", required = true)
+ protected String taxonomicDivision;
+
+ @XmlAttribute(name = "moleculeType", required = true)
+ protected String moleculeType;
+
+ @XmlAttribute(name = "sequenceLength", required = true)
+ protected BigInteger sequenceLength;
+
+ @XmlAttribute(name = "topology", required = true)
+ protected String topology;
+
+ @XmlAttribute(name = "firstPublic")
+ @XmlSchemaType(name = "date")
+ protected XMLGregorianCalendar firstPublic;
+
+ @XmlAttribute(name = "firstPublicRelease")
+ protected BigInteger firstPublicRelease;
+
+ @XmlAttribute(name = "lastUpdated")
+ @XmlSchemaType(name = "date")
+ protected XMLGregorianCalendar lastUpdated;
+
+ @XmlAttribute(name = "lastUpdatedRelease")
+ protected BigInteger lastUpdatedRelease;
+
+ /**
+ * Gets the value of the secondaryAccession property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the secondaryAccession property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getSecondaryAccession().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link String }
+ *
+ *
+ */
+ public List<String> getSecondaryAccession()
+ {
+ if (secondaryAccession == null)
+ {
+ secondaryAccession = new ArrayList<String>();
+ }
+ return this.secondaryAccession;
+ }
+
+ /**
+ * Gets the value of the projectAccession property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the projectAccession property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getProjectAccession().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link String }
+ *
+ *
+ */
+ public List<String> getProjectAccession()
+ {
+ if (projectAccession == null)
+ {
+ projectAccession = new ArrayList<String>();
+ }
+ return this.projectAccession;
+ }
+
+ /**
+ * Gets the value of the description property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDescription()
+ {
+ return description;
+ }
+
+ /**
+ * Sets the value of the description property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDescription(String value)
+ {
+ this.description = value;
+ }
+
+ /**
+ * Gets the value of the comment property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getComment()
+ {
+ return comment;
+ }
+
+ /**
+ * Sets the value of the comment property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setComment(String value)
+ {
+ this.comment = value;
+ }
+
+ /**
+ * Gets the value of the keyword property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the keyword property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getKeyword().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link String }
+ *
+ *
+ */
+ public List<String> getKeyword()
+ {
+ if (keyword == null)
+ {
+ keyword = new ArrayList<String>();
+ }
+ return this.keyword;
+ }
+
+ /**
+ * Gets the value of the reference property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the reference property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getReference().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link EntryType.Reference }
+ *
+ *
+ */
+ public List<EntryType.Reference> getReference()
+ {
+ if (reference == null)
+ {
+ reference = new ArrayList<EntryType.Reference>();
+ }
+ return this.reference;
+ }
+
+ /**
+ * Gets the value of the xref property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the xref property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getXref().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link XrefType }
+ *
+ *
+ */
+ public List<XrefType> getXref()
+ {
+ if (xref == null)
+ {
+ xref = new ArrayList<XrefType>();
+ }
+ return this.xref;
+ }
+
+ /**
+ * Gets the value of the feature property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the feature property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getFeature().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link EntryType.Feature }
+ *
+ *
+ */
+ public List<EntryType.Feature> getFeature()
+ {
+ if (feature == null)
+ {
+ feature = new ArrayList<EntryType.Feature>();
+ }
+ return this.feature;
+ }
+
+ /**
+ * Gets the value of the assembly property.
+ *
+ * @return possible object is {@link EntryType.Assembly }
+ *
+ */
+ public EntryType.Assembly getAssembly()
+ {
+ return assembly;
+ }
+
+ /**
+ * Sets the value of the assembly property.
+ *
+ * @param value
+ * allowed object is {@link EntryType.Assembly }
+ *
+ */
+ public void setAssembly(EntryType.Assembly value)
+ {
+ this.assembly = value;
+ }
+
+ /**
+ * Gets the value of the contig property.
+ *
+ * @return possible object is {@link EntryType.Contig }
+ *
+ */
+ public EntryType.Contig getContig()
+ {
+ return contig;
+ }
+
+ /**
+ * Sets the value of the contig property.
+ *
+ * @param value
+ * allowed object is {@link EntryType.Contig }
+ *
+ */
+ public void setContig(EntryType.Contig value)
+ {
+ this.contig = value;
+ }
+
+ /**
+ * Gets the value of the sequence property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getSequence()
+ {
+ return sequence;
+ }
+
+ /**
+ * Sets the value of the sequence property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setSequence(String value)
+ {
+ this.sequence = value;
+ }
+
+ /**
+ * Gets the value of the accession property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getAccession()
+ {
+ return accession;
+ }
+
+ /**
+ * Sets the value of the accession property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setAccession(String value)
+ {
+ this.accession = value;
+ }
+
+ /**
+ * Gets the value of the version property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getVersion()
+ {
+ return version;
+ }
+
+ /**
+ * Sets the value of the version property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setVersion(BigInteger value)
+ {
+ this.version = value;
+ }
+
+ /**
+ * Gets the value of the entryVersion property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getEntryVersion()
+ {
+ return entryVersion;
+ }
+
+ /**
+ * Sets the value of the entryVersion property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setEntryVersion(BigInteger value)
+ {
+ this.entryVersion = value;
+ }
+
+ /**
+ * Gets the value of the dataClass property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDataClass()
+ {
+ return dataClass;
+ }
+
+ /**
+ * Sets the value of the dataClass property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDataClass(String value)
+ {
+ this.dataClass = value;
+ }
+
+ /**
+ * Gets the value of the taxonomicDivision property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getTaxonomicDivision()
+ {
+ return taxonomicDivision;
+ }
+
+ /**
+ * Sets the value of the taxonomicDivision property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setTaxonomicDivision(String value)
+ {
+ this.taxonomicDivision = value;
+ }
+
+ /**
+ * Gets the value of the moleculeType property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getMoleculeType()
+ {
+ return moleculeType;
+ }
+
+ /**
+ * Sets the value of the moleculeType property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setMoleculeType(String value)
+ {
+ this.moleculeType = value;
+ }
+
+ /**
+ * Gets the value of the sequenceLength property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getSequenceLength()
+ {
+ return sequenceLength;
+ }
+
+ /**
+ * Sets the value of the sequenceLength property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setSequenceLength(BigInteger value)
+ {
+ this.sequenceLength = value;
+ }
+
+ /**
+ * Gets the value of the topology property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getTopology()
+ {
+ return topology;
+ }
+
+ /**
+ * Sets the value of the topology property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setTopology(String value)
+ {
+ this.topology = value;
+ }
+
+ /**
+ * Gets the value of the firstPublic property.
+ *
+ * @return possible object is {@link XMLGregorianCalendar }
+ *
+ */
+ public XMLGregorianCalendar getFirstPublic()
+ {
+ return firstPublic;
+ }
+
+ /**
+ * Sets the value of the firstPublic property.
+ *
+ * @param value
+ * allowed object is {@link XMLGregorianCalendar }
+ *
+ */
+ public void setFirstPublic(XMLGregorianCalendar value)
+ {
+ this.firstPublic = value;
+ }
+
+ /**
+ * Gets the value of the firstPublicRelease property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getFirstPublicRelease()
+ {
+ return firstPublicRelease;
+ }
+
+ /**
+ * Sets the value of the firstPublicRelease property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setFirstPublicRelease(BigInteger value)
+ {
+ this.firstPublicRelease = value;
+ }
+
+ /**
+ * Gets the value of the lastUpdated property.
+ *
+ * @return possible object is {@link XMLGregorianCalendar }
+ *
+ */
+ public XMLGregorianCalendar getLastUpdated()
+ {
+ return lastUpdated;
+ }
+
+ /**
+ * Sets the value of the lastUpdated property.
+ *
+ * @param value
+ * allowed object is {@link XMLGregorianCalendar }
+ *
+ */
+ public void setLastUpdated(XMLGregorianCalendar value)
+ {
+ this.lastUpdated = value;
+ }
+
+ /**
+ * Gets the value of the lastUpdatedRelease property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getLastUpdatedRelease()
+ {
+ return lastUpdatedRelease;
+ }
+
+ /**
+ * Sets the value of the lastUpdatedRelease property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setLastUpdatedRelease(BigInteger value)
+ {
+ this.lastUpdatedRelease = value;
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="range" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "range" })
+ public static class Assembly
+ {
+
@XmlElement(required = true)
- protected String description;
- protected String comment;
- protected List<String> keyword;
- protected List<EntryType.Reference> reference;
- protected List<XrefType> xref;
- protected List<EntryType.Feature> feature;
- protected EntryType.Assembly assembly;
- protected EntryType.Contig contig;
- protected String sequence;
- @XmlAttribute(name = "accession", required = true)
- protected String accession;
- @XmlAttribute(name = "version", required = true)
- protected BigInteger version;
- @XmlAttribute(name = "entryVersion")
- protected BigInteger entryVersion;
- @XmlAttribute(name = "dataClass", required = true)
- protected String dataClass;
- @XmlAttribute(name = "taxonomicDivision", required = true)
- protected String taxonomicDivision;
- @XmlAttribute(name = "moleculeType", required = true)
- protected String moleculeType;
- @XmlAttribute(name = "sequenceLength", required = true)
- protected BigInteger sequenceLength;
- @XmlAttribute(name = "topology", required = true)
- protected String topology;
- @XmlAttribute(name = "firstPublic")
- @XmlSchemaType(name = "date")
- protected XMLGregorianCalendar firstPublic;
- @XmlAttribute(name = "firstPublicRelease")
- protected BigInteger firstPublicRelease;
- @XmlAttribute(name = "lastUpdated")
- @XmlSchemaType(name = "date")
- protected XMLGregorianCalendar lastUpdated;
- @XmlAttribute(name = "lastUpdatedRelease")
- protected BigInteger lastUpdatedRelease;
+ protected List<EntryType.Assembly.Range> range;
/**
- * Gets the value of the secondaryAccession property.
+ * Gets the value of the range property.
*
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the secondaryAccession property.
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the range property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
- * getSecondaryAccession().add(newItem);
- * </pre>
+ *
+ * <pre>
+ * getRange().add(newItem);
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
- * {@link String }
+ * {@link EntryType.Assembly.Range }
+ *
+ *
+ */
+ public List<EntryType.Assembly.Range> getRange()
+ {
+ if (range == null)
+ {
+ range = new ArrayList<EntryType.Assembly.Range>();
+ }
+ return this.range;
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
*
*
*/
- public List<String> getSecondaryAccession() {
- if (secondaryAccession == null) {
- secondaryAccession = new ArrayList<String>();
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Range
+ {
+
+ @XmlAttribute(name = "begin", required = true)
+ protected BigInteger begin;
+
+ @XmlAttribute(name = "end", required = true)
+ protected BigInteger end;
+
+ @XmlAttribute(name = "primaryBegin")
+ protected BigInteger primaryBegin;
+
+ @XmlAttribute(name = "primaryEnd")
+ protected BigInteger primaryEnd;
+
+ @XmlAttribute(name = "accession", required = true)
+ protected String accession;
+
+ @XmlAttribute(name = "version", required = true)
+ protected BigInteger version;
+
+ @XmlAttribute(name = "complement")
+ protected Boolean complement;
+
+ /**
+ * Gets the value of the begin property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getBegin()
+ {
+ return begin;
+ }
+
+ /**
+ * Sets the value of the begin property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setBegin(BigInteger value)
+ {
+ this.begin = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getEnd()
+ {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setEnd(BigInteger value)
+ {
+ this.end = value;
+ }
+
+ /**
+ * Gets the value of the primaryBegin property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getPrimaryBegin()
+ {
+ return primaryBegin;
+ }
+
+ /**
+ * Sets the value of the primaryBegin property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setPrimaryBegin(BigInteger value)
+ {
+ this.primaryBegin = value;
+ }
+
+ /**
+ * Gets the value of the primaryEnd property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getPrimaryEnd()
+ {
+ return primaryEnd;
+ }
+
+ /**
+ * Sets the value of the primaryEnd property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setPrimaryEnd(BigInteger value)
+ {
+ this.primaryEnd = value;
+ }
+
+ /**
+ * Gets the value of the accession property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getAccession()
+ {
+ return accession;
+ }
+
+ /**
+ * Sets the value of the accession property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setAccession(String value)
+ {
+ this.accession = value;
+ }
+
+ /**
+ * Gets the value of the version property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getVersion()
+ {
+ return version;
+ }
+
+ /**
+ * Sets the value of the version property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setVersion(BigInteger value)
+ {
+ this.version = value;
+ }
+
+ /**
+ * Gets the value of the complement property.
+ *
+ * @return possible object is {@link Boolean }
+ *
+ */
+ public boolean isComplement()
+ {
+ if (complement == null)
+ {
+ return false;
+ }
+ else
+ {
+ return complement;
}
- return this.secondaryAccession;
+ }
+
+ /**
+ * Sets the value of the complement property.
+ *
+ * @param value
+ * allowed object is {@link Boolean }
+ *
+ */
+ public void setComplement(Boolean value)
+ {
+ this.complement = value;
+ }
+
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <choice maxOccurs="unbounded" minOccurs="0">
+ * <element name="range">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="gap">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </choice>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "rangeOrGap" })
+ public static class Contig
+ {
+
+ @XmlElements({
+ @XmlElement(name = "range", type = EntryType.Contig.Range.class),
+ @XmlElement(name = "gap", type = EntryType.Contig.Gap.class) })
+ protected List<Object> rangeOrGap;
+
/**
- * Gets the value of the projectAccession property.
+ * Gets the value of the rangeOrGap property.
*
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the projectAccession property.
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the rangeOrGap property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
- * getProjectAccession().add(newItem);
- * </pre>
*
+ * <pre>
+ * getRangeOrGap().add(newItem);
+ * </pre>
*
- * <p>
+ *
+ * <p>
* Objects of the following type(s) are allowed in the list
- * {@link String }
+ * {@link EntryType.Contig.Range } {@link EntryType.Contig.Gap }
*
*
*/
- public List<String> getProjectAccession() {
- if (projectAccession == null) {
- projectAccession = new ArrayList<String>();
- }
- return this.projectAccession;
+ public List<Object> getRangeOrGap()
+ {
+ if (rangeOrGap == null)
+ {
+ rangeOrGap = new ArrayList<Object>();
+ }
+ return this.rangeOrGap;
}
/**
- * Gets the value of the description property.
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDescription() {
- return description;
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Gap
+ {
+
+ @XmlAttribute(name = "begin", required = true)
+ protected BigInteger begin;
+
+ @XmlAttribute(name = "end", required = true)
+ protected BigInteger end;
+
+ @XmlAttribute(name = "length", required = true)
+ protected BigInteger length;
+
+ @XmlAttribute(name = "unknownLength")
+ protected Boolean unknownLength;
+
+ /**
+ * Gets the value of the begin property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getBegin()
+ {
+ return begin;
+ }
+
+ /**
+ * Sets the value of the begin property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setBegin(BigInteger value)
+ {
+ this.begin = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getEnd()
+ {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setEnd(BigInteger value)
+ {
+ this.end = value;
+ }
+
+ /**
+ * Gets the value of the length property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getLength()
+ {
+ return length;
+ }
+
+ /**
+ * Sets the value of the length property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setLength(BigInteger value)
+ {
+ this.length = value;
+ }
+
+ /**
+ * Gets the value of the unknownLength property.
+ *
+ * @return possible object is {@link Boolean }
+ *
+ */
+ public boolean isUnknownLength()
+ {
+ if (unknownLength == null)
+ {
+ return false;
+ }
+ else
+ {
+ return unknownLength;
+ }
+ }
+
+ /**
+ * Sets the value of the unknownLength property.
+ *
+ * @param value
+ * allowed object is {@link Boolean }
+ *
+ */
+ public void setUnknownLength(Boolean value)
+ {
+ this.unknownLength = value;
+ }
+
}
/**
- * Sets the value of the description property.
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDescription(String value) {
- this.description = value;
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Range
+ {
+
+ @XmlAttribute(name = "begin", required = true)
+ protected BigInteger begin;
+
+ @XmlAttribute(name = "end", required = true)
+ protected BigInteger end;
+
+ @XmlAttribute(name = "primaryBegin")
+ protected BigInteger primaryBegin;
+
+ @XmlAttribute(name = "primaryEnd")
+ protected BigInteger primaryEnd;
+
+ @XmlAttribute(name = "accession", required = true)
+ protected String accession;
+
+ @XmlAttribute(name = "version", required = true)
+ protected BigInteger version;
+
+ @XmlAttribute(name = "complement")
+ protected Boolean complement;
+
+ /**
+ * Gets the value of the begin property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getBegin()
+ {
+ return begin;
+ }
+
+ /**
+ * Sets the value of the begin property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setBegin(BigInteger value)
+ {
+ this.begin = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getEnd()
+ {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setEnd(BigInteger value)
+ {
+ this.end = value;
+ }
+
+ /**
+ * Gets the value of the primaryBegin property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getPrimaryBegin()
+ {
+ return primaryBegin;
+ }
+
+ /**
+ * Sets the value of the primaryBegin property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setPrimaryBegin(BigInteger value)
+ {
+ this.primaryBegin = value;
+ }
+
+ /**
+ * Gets the value of the primaryEnd property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getPrimaryEnd()
+ {
+ return primaryEnd;
+ }
+
+ /**
+ * Sets the value of the primaryEnd property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setPrimaryEnd(BigInteger value)
+ {
+ this.primaryEnd = value;
+ }
+
+ /**
+ * Gets the value of the accession property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getAccession()
+ {
+ return accession;
+ }
+
+ /**
+ * Sets the value of the accession property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setAccession(String value)
+ {
+ this.accession = value;
+ }
+
+ /**
+ * Gets the value of the version property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getVersion()
+ {
+ return version;
+ }
+
+ /**
+ * Sets the value of the version property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setVersion(BigInteger value)
+ {
+ this.version = value;
+ }
+
+ /**
+ * Gets the value of the complement property.
+ *
+ * @return possible object is {@link Boolean }
+ *
+ */
+ public boolean isComplement()
+ {
+ if (complement == null)
+ {
+ return false;
+ }
+ else
+ {
+ return complement;
+ }
+ }
+
+ /**
+ * Sets the value of the complement property.
+ *
+ * @param value
+ * allowed object is {@link Boolean }
+ *
+ */
+ public void setComplement(Boolean value)
+ {
+ this.complement = value;
+ }
+
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="taxon" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="lineage" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="taxon" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="qualifier" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "taxon", "xref", "qualifier" })
+ public static class Feature
+ {
+
+ protected EntryType.Feature.FeatureTaxon taxon;
+
+ protected List<XrefType> xref;
+
+ protected List<EntryType.Feature.Qualifier> qualifier;
+
+ @XmlAttribute(name = "name", required = true)
+ protected String name;
+
+ @XmlAttribute(name = "location", required = true)
+ protected String location;
+
/**
- * Gets the value of the comment property.
+ * Gets the value of the taxon property.
+ *
+ * @return possible object is {@link EntryType.Feature.FeatureTaxon }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getComment() {
- return comment;
+ public EntryType.Feature.FeatureTaxon getTaxon()
+ {
+ return taxon;
}
/**
- * Sets the value of the comment property.
+ * Sets the value of the taxon property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link EntryType.Feature.FeatureTaxon }
+ *
*/
- public void setComment(String value) {
- this.comment = value;
+ public void setTaxon(EntryType.Feature.FeatureTaxon value)
+ {
+ this.taxon = value;
}
/**
- * Gets the value of the keyword property.
+ * Gets the value of the xref property.
*
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the keyword property.
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the xref property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
- * getKeyword().add(newItem);
- * </pre>
*
+ * <pre>
+ * getXref().add(newItem);
+ * </pre>
*
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link String }
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link XrefType
+ * }
*
*
*/
- public List<String> getKeyword() {
- if (keyword == null) {
- keyword = new ArrayList<String>();
- }
- return this.keyword;
+ public List<XrefType> getXref()
+ {
+ if (xref == null)
+ {
+ xref = new ArrayList<XrefType>();
+ }
+ return this.xref;
}
/**
- * Gets the value of the reference property.
+ * Gets the value of the qualifier property.
*
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the reference property.
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the qualifier property.
*
- * <p>
+ * <p>
* For example, to add a new item, do as follows:
- * <pre>
- * getReference().add(newItem);
- * </pre>
+ *
+ * <pre>
+ * getQualifier().add(newItem);
+ * </pre>
*
*
- * <p>
+ * <p>
* Objects of the following type(s) are allowed in the list
- * {@link EntryType.Reference }
+ * {@link EntryType.Feature.Qualifier }
*
*
*/
- public List<EntryType.Reference> getReference() {
- if (reference == null) {
- reference = new ArrayList<EntryType.Reference>();
- }
- return this.reference;
+ public List<EntryType.Feature.Qualifier> getQualifier()
+ {
+ if (qualifier == null)
+ {
+ qualifier = new ArrayList<EntryType.Feature.Qualifier>();
+ }
+ return this.qualifier;
}
/**
- * Gets the value of the xref property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the xref property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getXref().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link XrefType }
+ * Gets the value of the name property.
*
+ * @return possible object is {@link String }
*
*/
- public List<XrefType> getXref() {
- if (xref == null) {
- xref = new ArrayList<XrefType>();
- }
- return this.xref;
+ public String getName()
+ {
+ return name;
}
/**
- * Gets the value of the feature property.
+ * Sets the value of the name property.
*
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the feature property.
+ * @param value
+ * allowed object is {@link String }
*
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getFeature().add(newItem);
- * </pre>
+ */
+ public void setName(String value)
+ {
+ this.name = value;
+ }
+
+ /**
+ * Gets the value of the location property.
*
+ * @return possible object is {@link String }
*
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link EntryType.Feature }
+ */
+ public String getLocation()
+ {
+ return location;
+ }
+
+ /**
+ * Sets the value of the location property.
*
+ * @param value
+ * allowed object is {@link String }
*
*/
- public List<EntryType.Feature> getFeature() {
- if (feature == null) {
- feature = new ArrayList<EntryType.Feature>();
- }
- return this.feature;
+ public void setLocation(String value)
+ {
+ this.location = value;
}
/**
- * Gets the value of the assembly property.
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="lineage" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="taxon" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
*
- * @return
- * possible object is
- * {@link EntryType.Assembly }
- *
*/
- public EntryType.Assembly getAssembly() {
- return assembly;
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "lineage" })
+ public static class FeatureTaxon
+ {
+
+ protected EntryType.Feature.FeatureTaxon.Lineage lineage;
+
+ @XmlAttribute(name = "scientificName", required = true)
+ protected String scientificName;
+
+ @XmlAttribute(name = "commonName")
+ protected String commonName;
+
+ @XmlAttribute(name = "taxId")
+ protected BigInteger taxId;
+
+ /**
+ * Gets the value of the lineage property.
+ *
+ * @return possible object is
+ * {@link EntryType.Feature.FeatureTaxon.Lineage }
+ *
+ */
+ public EntryType.Feature.FeatureTaxon.Lineage getLineage()
+ {
+ return lineage;
+ }
+
+ /**
+ * Sets the value of the lineage property.
+ *
+ * @param value
+ * allowed object is
+ * {@link EntryType.Feature.FeatureTaxon.Lineage }
+ *
+ */
+ public void setLineage(EntryType.Feature.FeatureTaxon.Lineage value)
+ {
+ this.lineage = value;
+ }
+
+ /**
+ * Gets the value of the scientificName property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getScientificName()
+ {
+ return scientificName;
+ }
+
+ /**
+ * Sets the value of the scientificName property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setScientificName(String value)
+ {
+ this.scientificName = value;
+ }
+
+ /**
+ * Gets the value of the commonName property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getCommonName()
+ {
+ return commonName;
+ }
+
+ /**
+ * Sets the value of the commonName property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setCommonName(String value)
+ {
+ this.commonName = value;
+ }
+
+ /**
+ * Gets the value of the taxId property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getTaxId()
+ {
+ return taxId;
+ }
+
+ /**
+ * Sets the value of the taxId property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setTaxId(BigInteger value)
+ {
+ this.taxId = value;
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="taxon" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "taxon" })
+ public static class Lineage
+ {
+
+ @XmlElement(required = true)
+ protected List<EntryType.Feature.FeatureTaxon.Lineage.Taxon> taxon;
+
+ /**
+ * Gets the value of the taxon property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list
+ * will be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the taxon property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getTaxon().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link EntryType.Feature.FeatureTaxon.Lineage.Taxon }
+ *
+ *
+ */
+ public List<EntryType.Feature.FeatureTaxon.Lineage.Taxon> getTaxon()
+ {
+ if (taxon == null)
+ {
+ taxon = new ArrayList<EntryType.Feature.FeatureTaxon.Lineage.Taxon>();
+ }
+ return this.taxon;
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content
+ * contained within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Taxon
+ {
+
+ @XmlAttribute(name = "scientificName", required = true)
+ protected String scientificName;
+
+ /**
+ * Gets the value of the scientificName property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getScientificName()
+ {
+ return scientificName;
+ }
+
+ /**
+ * Sets the value of the scientificName property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setScientificName(String value)
+ {
+ this.scientificName = value;
+ }
+
+ }
+
+ }
+
}
/**
- * Sets the value of the assembly property.
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
*
- * @param value
- * allowed object is
- * {@link EntryType.Assembly }
- *
*/
- public void setAssembly(EntryType.Assembly value) {
- this.assembly = value;
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "value" })
+ public static class Qualifier
+ {
+
+ protected String value;
+
+ @XmlAttribute(name = "name", required = true)
+ protected String name;
+
+ /**
+ * Gets the value of the value property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getValue()
+ {
+ return value;
+ }
+
+ /**
+ * Sets the value of the value property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setValue(String value)
+ {
+ this.value = value;
+ }
+
+ /**
+ * Gets the value of the name property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getName()
+ {
+ return name;
+ }
+
+ /**
+ * Sets the value of the name property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setName(String value)
+ {
+ this.name = value;
+ }
+
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/>
+ * <element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/>
+ * </sequence>
+ * <attribute name="type" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="submission"/>
+ * <enumeration value="book"/>
+ * <enumeration value="article"/>
+ * <enumeration value="patent"/>
+ * <enumeration value="thesis"/>
+ * <enumeration value="unpublished"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(
+ name = "",
+ propOrder =
+ { "title", "author", "applicant", "consortium", "submissionDate",
+ "journal", "year", "volume", "issue", "firstPage", "lastPage",
+ "comment", "referenceLocation", "xref" })
+ public static class Reference
+ {
+
+ protected String title;
+
+ protected List<String> author;
+
+ protected List<String> applicant;
+
+ protected String consortium;
+
+ @XmlSchemaType(name = "date")
+ protected XMLGregorianCalendar submissionDate;
+
+ protected String journal;
+
+ protected String year;
+
+ protected String volume;
+
+ protected String issue;
+
+ protected String firstPage;
+
+ protected String lastPage;
+
+ protected String comment;
+
+ protected String referenceLocation;
+
+ protected List<XrefType> xref;
+
+ @XmlAttribute(name = "type", required = true)
+ protected String type;
+
+ @XmlAttribute(name = "number", required = true)
+ protected BigInteger number;
+
+ @XmlAttribute(name = "location")
+ protected String location;
+
/**
- * Gets the value of the contig property.
+ * Gets the value of the title property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link EntryType.Contig }
- *
*/
- public EntryType.Contig getContig() {
- return contig;
+ public String getTitle()
+ {
+ return title;
}
/**
- * Sets the value of the contig property.
+ * Sets the value of the title property.
*
* @param value
- * allowed object is
- * {@link EntryType.Contig }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setContig(EntryType.Contig value) {
- this.contig = value;
+ public void setTitle(String value)
+ {
+ this.title = value;
}
/**
- * Gets the value of the sequence property.
+ * Gets the value of the author property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the author property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getAuthor().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link String }
+ *
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getSequence() {
- return sequence;
+ public List<String> getAuthor()
+ {
+ if (author == null)
+ {
+ author = new ArrayList<String>();
+ }
+ return this.author;
}
/**
- * Sets the value of the sequence property.
+ * Gets the value of the applicant property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the applicant property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getApplicant().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link String }
+ *
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setSequence(String value) {
- this.sequence = value;
+ public List<String> getApplicant()
+ {
+ if (applicant == null)
+ {
+ applicant = new ArrayList<String>();
+ }
+ return this.applicant;
}
/**
- * Gets the value of the accession property.
+ * Gets the value of the consortium property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getAccession() {
- return accession;
+ public String getConsortium()
+ {
+ return consortium;
}
/**
- * Sets the value of the accession property.
+ * Sets the value of the consortium property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setAccession(String value) {
- this.accession = value;
+ public void setConsortium(String value)
+ {
+ this.consortium = value;
}
/**
- * Gets the value of the version property.
+ * Gets the value of the submissionDate property.
+ *
+ * @return possible object is {@link XMLGregorianCalendar }
*
- * @return
- * possible object is
- * {@link BigInteger }
- *
*/
- public BigInteger getVersion() {
- return version;
+ public XMLGregorianCalendar getSubmissionDate()
+ {
+ return submissionDate;
}
/**
- * Sets the value of the version property.
+ * Sets the value of the submissionDate property.
*
* @param value
- * allowed object is
- * {@link BigInteger }
- *
+ * allowed object is {@link XMLGregorianCalendar }
+ *
*/
- public void setVersion(BigInteger value) {
- this.version = value;
+ public void setSubmissionDate(XMLGregorianCalendar value)
+ {
+ this.submissionDate = value;
}
/**
- * Gets the value of the entryVersion property.
+ * Gets the value of the journal property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link BigInteger }
- *
*/
- public BigInteger getEntryVersion() {
- return entryVersion;
+ public String getJournal()
+ {
+ return journal;
}
/**
- * Sets the value of the entryVersion property.
+ * Sets the value of the journal property.
*
* @param value
- * allowed object is
- * {@link BigInteger }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setEntryVersion(BigInteger value) {
- this.entryVersion = value;
+ public void setJournal(String value)
+ {
+ this.journal = value;
}
/**
- * Gets the value of the dataClass property.
+ * Gets the value of the year property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDataClass() {
- return dataClass;
+ public String getYear()
+ {
+ return year;
}
/**
- * Sets the value of the dataClass property.
+ * Sets the value of the year property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setDataClass(String value) {
- this.dataClass = value;
+ public void setYear(String value)
+ {
+ this.year = value;
}
/**
- * Gets the value of the taxonomicDivision property.
+ * Gets the value of the volume property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getTaxonomicDivision() {
- return taxonomicDivision;
+ public String getVolume()
+ {
+ return volume;
}
/**
- * Sets the value of the taxonomicDivision property.
+ * Sets the value of the volume property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setTaxonomicDivision(String value) {
- this.taxonomicDivision = value;
+ public void setVolume(String value)
+ {
+ this.volume = value;
}
/**
- * Gets the value of the moleculeType property.
+ * Gets the value of the issue property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getMoleculeType() {
- return moleculeType;
+ public String getIssue()
+ {
+ return issue;
}
/**
- * Sets the value of the moleculeType property.
+ * Sets the value of the issue property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setMoleculeType(String value) {
- this.moleculeType = value;
+ public void setIssue(String value)
+ {
+ this.issue = value;
}
/**
- * Gets the value of the sequenceLength property.
+ * Gets the value of the firstPage property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link BigInteger }
- *
*/
- public BigInteger getSequenceLength() {
- return sequenceLength;
+ public String getFirstPage()
+ {
+ return firstPage;
}
/**
- * Sets the value of the sequenceLength property.
+ * Sets the value of the firstPage property.
*
* @param value
- * allowed object is
- * {@link BigInteger }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setSequenceLength(BigInteger value) {
- this.sequenceLength = value;
+ public void setFirstPage(String value)
+ {
+ this.firstPage = value;
}
/**
- * Gets the value of the topology property.
+ * Gets the value of the lastPage property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getTopology() {
- return topology;
+ public String getLastPage()
+ {
+ return lastPage;
}
/**
- * Sets the value of the topology property.
+ * Sets the value of the lastPage property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setTopology(String value) {
- this.topology = value;
+ public void setLastPage(String value)
+ {
+ this.lastPage = value;
}
/**
- * Gets the value of the firstPublic property.
+ * Gets the value of the comment property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link XMLGregorianCalendar }
- *
*/
- public XMLGregorianCalendar getFirstPublic() {
- return firstPublic;
+ public String getComment()
+ {
+ return comment;
}
/**
- * Sets the value of the firstPublic property.
+ * Sets the value of the comment property.
*
* @param value
- * allowed object is
- * {@link XMLGregorianCalendar }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setFirstPublic(XMLGregorianCalendar value) {
- this.firstPublic = value;
+ public void setComment(String value)
+ {
+ this.comment = value;
}
/**
- * Gets the value of the firstPublicRelease property.
+ * Gets the value of the referenceLocation property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link BigInteger }
- *
*/
- public BigInteger getFirstPublicRelease() {
- return firstPublicRelease;
+ public String getReferenceLocation()
+ {
+ return referenceLocation;
}
/**
- * Sets the value of the firstPublicRelease property.
+ * Sets the value of the referenceLocation property.
*
* @param value
- * allowed object is
- * {@link BigInteger }
- *
+ * allowed object is {@link String }
+ *
+ */
+ public void setReferenceLocation(String value)
+ {
+ this.referenceLocation = value;
+ }
+
+ /**
+ * Gets the value of the xref property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the xref property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getXref().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link XrefType
+ * }
+ *
+ *
*/
- public void setFirstPublicRelease(BigInteger value) {
- this.firstPublicRelease = value;
+ public List<XrefType> getXref()
+ {
+ if (xref == null)
+ {
+ xref = new ArrayList<XrefType>();
+ }
+ return this.xref;
}
/**
- * Gets the value of the lastUpdated property.
+ * Gets the value of the type property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link XMLGregorianCalendar }
- *
*/
- public XMLGregorianCalendar getLastUpdated() {
- return lastUpdated;
+ public String getType()
+ {
+ return type;
}
/**
- * Sets the value of the lastUpdated property.
+ * Sets the value of the type property.
*
* @param value
- * allowed object is
- * {@link XMLGregorianCalendar }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setLastUpdated(XMLGregorianCalendar value) {
- this.lastUpdated = value;
+ public void setType(String value)
+ {
+ this.type = value;
}
/**
- * Gets the value of the lastUpdatedRelease property.
+ * Gets the value of the number property.
+ *
+ * @return possible object is {@link BigInteger }
*
- * @return
- * possible object is
- * {@link BigInteger }
- *
*/
- public BigInteger getLastUpdatedRelease() {
- return lastUpdatedRelease;
+ public BigInteger getNumber()
+ {
+ return number;
}
/**
- * Sets the value of the lastUpdatedRelease property.
+ * Sets the value of the number property.
*
* @param value
- * allowed object is
- * {@link BigInteger }
- *
+ * allowed object is {@link BigInteger }
+ *
*/
- public void setLastUpdatedRelease(BigInteger value) {
- this.lastUpdatedRelease = value;
+ public void setNumber(BigInteger value)
+ {
+ this.number = value;
}
-
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="range" maxOccurs="unbounded"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
+ * Gets the value of the location property.
*
+ * @return possible object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "range"
- })
- public static class Assembly {
-
- @XmlElement(required = true)
- protected List<EntryType.Assembly.Range> range;
-
- /**
- * Gets the value of the range property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the range property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getRange().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link EntryType.Assembly.Range }
- *
- *
- */
- public List<EntryType.Assembly.Range> getRange() {
- if (range == null) {
- range = new ArrayList<EntryType.Assembly.Range>();
- }
- return this.range;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Range {
-
- @XmlAttribute(name = "begin", required = true)
- protected BigInteger begin;
- @XmlAttribute(name = "end", required = true)
- protected BigInteger end;
- @XmlAttribute(name = "primaryBegin")
- protected BigInteger primaryBegin;
- @XmlAttribute(name = "primaryEnd")
- protected BigInteger primaryEnd;
- @XmlAttribute(name = "accession", required = true)
- protected String accession;
- @XmlAttribute(name = "version", required = true)
- protected BigInteger version;
- @XmlAttribute(name = "complement")
- protected Boolean complement;
-
- /**
- * Gets the value of the begin property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getBegin() {
- return begin;
- }
-
- /**
- * Sets the value of the begin property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setBegin(BigInteger value) {
- this.begin = value;
- }
-
- /**
- * Gets the value of the end property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getEnd() {
- return end;
- }
-
- /**
- * Sets the value of the end property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setEnd(BigInteger value) {
- this.end = value;
- }
-
- /**
- * Gets the value of the primaryBegin property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getPrimaryBegin() {
- return primaryBegin;
- }
-
- /**
- * Sets the value of the primaryBegin property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setPrimaryBegin(BigInteger value) {
- this.primaryBegin = value;
- }
-
- /**
- * Gets the value of the primaryEnd property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getPrimaryEnd() {
- return primaryEnd;
- }
-
- /**
- * Sets the value of the primaryEnd property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setPrimaryEnd(BigInteger value) {
- this.primaryEnd = value;
- }
-
- /**
- * Gets the value of the accession property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getAccession() {
- return accession;
- }
-
- /**
- * Sets the value of the accession property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setAccession(String value) {
- this.accession = value;
- }
-
- /**
- * Gets the value of the version property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getVersion() {
- return version;
- }
-
- /**
- * Sets the value of the version property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setVersion(BigInteger value) {
- this.version = value;
- }
-
- /**
- * Gets the value of the complement property.
- *
- * @return
- * possible object is
- * {@link Boolean }
- *
- */
- public boolean isComplement() {
- if (complement == null) {
- return false;
- } else {
- return complement;
- }
- }
-
- /**
- * Sets the value of the complement property.
- *
- * @param value
- * allowed object is
- * {@link Boolean }
- *
- */
- public void setComplement(Boolean value) {
- this.complement = value;
- }
-
- }
-
+ public String getLocation()
+ {
+ return location;
}
-
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;choice maxOccurs="unbounded" minOccurs="0"&gt;
- * &lt;element name="range"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="gap"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/choice&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
+ * Sets the value of the location property.
*
+ * @param value
+ * allowed object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "rangeOrGap"
- })
- public static class Contig {
-
- @XmlElements({
- @XmlElement(name = "range", type = EntryType.Contig.Range.class),
- @XmlElement(name = "gap", type = EntryType.Contig.Gap.class)
- })
- protected List<Object> rangeOrGap;
+ public void setLocation(String value)
+ {
+ this.location = value;
+ }
- /**
- * Gets the value of the rangeOrGap property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the rangeOrGap property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getRangeOrGap().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link EntryType.Contig.Range }
- * {@link EntryType.Contig.Gap }
- *
- *
- */
- public List<Object> getRangeOrGap() {
- if (rangeOrGap == null) {
- rangeOrGap = new ArrayList<Object>();
- }
- return this.rangeOrGap;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="length" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="unknownLength" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Gap {
-
- @XmlAttribute(name = "begin", required = true)
- protected BigInteger begin;
- @XmlAttribute(name = "end", required = true)
- protected BigInteger end;
- @XmlAttribute(name = "length", required = true)
- protected BigInteger length;
- @XmlAttribute(name = "unknownLength")
- protected Boolean unknownLength;
-
- /**
- * Gets the value of the begin property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getBegin() {
- return begin;
- }
-
- /**
- * Sets the value of the begin property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setBegin(BigInteger value) {
- this.begin = value;
- }
-
- /**
- * Gets the value of the end property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getEnd() {
- return end;
- }
-
- /**
- * Sets the value of the end property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setEnd(BigInteger value) {
- this.end = value;
- }
-
- /**
- * Gets the value of the length property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getLength() {
- return length;
- }
-
- /**
- * Sets the value of the length property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setLength(BigInteger value) {
- this.length = value;
- }
-
- /**
- * Gets the value of the unknownLength property.
- *
- * @return
- * possible object is
- * {@link Boolean }
- *
- */
- public boolean isUnknownLength() {
- if (unknownLength == null) {
- return false;
- } else {
- return unknownLength;
- }
- }
-
- /**
- * Sets the value of the unknownLength property.
- *
- * @param value
- * allowed object is
- * {@link Boolean }
- *
- */
- public void setUnknownLength(Boolean value) {
- this.unknownLength = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryBegin" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="primaryEnd" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="accession" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="complement" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Range {
-
- @XmlAttribute(name = "begin", required = true)
- protected BigInteger begin;
- @XmlAttribute(name = "end", required = true)
- protected BigInteger end;
- @XmlAttribute(name = "primaryBegin")
- protected BigInteger primaryBegin;
- @XmlAttribute(name = "primaryEnd")
- protected BigInteger primaryEnd;
- @XmlAttribute(name = "accession", required = true)
- protected String accession;
- @XmlAttribute(name = "version", required = true)
- protected BigInteger version;
- @XmlAttribute(name = "complement")
- protected Boolean complement;
-
- /**
- * Gets the value of the begin property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getBegin() {
- return begin;
- }
-
- /**
- * Sets the value of the begin property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setBegin(BigInteger value) {
- this.begin = value;
- }
-
- /**
- * Gets the value of the end property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getEnd() {
- return end;
- }
-
- /**
- * Sets the value of the end property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setEnd(BigInteger value) {
- this.end = value;
- }
-
- /**
- * Gets the value of the primaryBegin property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getPrimaryBegin() {
- return primaryBegin;
- }
-
- /**
- * Sets the value of the primaryBegin property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setPrimaryBegin(BigInteger value) {
- this.primaryBegin = value;
- }
-
- /**
- * Gets the value of the primaryEnd property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getPrimaryEnd() {
- return primaryEnd;
- }
-
- /**
- * Sets the value of the primaryEnd property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setPrimaryEnd(BigInteger value) {
- this.primaryEnd = value;
- }
-
- /**
- * Gets the value of the accession property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getAccession() {
- return accession;
- }
-
- /**
- * Sets the value of the accession property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setAccession(String value) {
- this.accession = value;
- }
-
- /**
- * Gets the value of the version property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getVersion() {
- return version;
- }
-
- /**
- * Sets the value of the version property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setVersion(BigInteger value) {
- this.version = value;
- }
-
- /**
- * Gets the value of the complement property.
- *
- * @return
- * possible object is
- * {@link Boolean }
- *
- */
- public boolean isComplement() {
- if (complement == null) {
- return false;
- } else {
- return complement;
- }
- }
-
- /**
- * Sets the value of the complement property.
- *
- * @param value
- * allowed object is
- * {@link Boolean }
- *
- */
- public void setComplement(Boolean value) {
- this.complement = value;
- }
-
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="taxon" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="lineage" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="taxon" maxOccurs="unbounded"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="qualifier" maxOccurs="unbounded" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="location" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "taxon",
- "xref",
- "qualifier"
- })
- public static class Feature {
-
- protected EntryType.Feature.FeatureTaxon taxon;
- protected List<XrefType> xref;
- protected List<EntryType.Feature.Qualifier> qualifier;
- @XmlAttribute(name = "name", required = true)
- protected String name;
- @XmlAttribute(name = "location", required = true)
- protected String location;
-
- /**
- * Gets the value of the taxon property.
- *
- * @return
- * possible object is
- * {@link EntryType.Feature.FeatureTaxon }
- *
- */
- public EntryType.Feature.FeatureTaxon getTaxon() {
- return taxon;
- }
-
- /**
- * Sets the value of the taxon property.
- *
- * @param value
- * allowed object is
- * {@link EntryType.Feature.FeatureTaxon }
- *
- */
- public void setTaxon(EntryType.Feature.FeatureTaxon value) {
- this.taxon = value;
- }
-
- /**
- * Gets the value of the xref property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the xref property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getXref().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link XrefType }
- *
- *
- */
- public List<XrefType> getXref() {
- if (xref == null) {
- xref = new ArrayList<XrefType>();
- }
- return this.xref;
- }
-
- /**
- * Gets the value of the qualifier property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the qualifier property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getQualifier().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link EntryType.Feature.Qualifier }
- *
- *
- */
- public List<EntryType.Feature.Qualifier> getQualifier() {
- if (qualifier == null) {
- qualifier = new ArrayList<EntryType.Feature.Qualifier>();
- }
- return this.qualifier;
- }
-
- /**
- * Gets the value of the name property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getName() {
- return name;
- }
-
- /**
- * Sets the value of the name property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setName(String value) {
- this.name = value;
- }
-
- /**
- * Gets the value of the location property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getLocation() {
- return location;
- }
-
- /**
- * Sets the value of the location property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setLocation(String value) {
- this.location = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="lineage" minOccurs="0"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="taxon" maxOccurs="unbounded"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="commonName" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="taxId" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "lineage"
- })
- public static class FeatureTaxon {
-
- protected EntryType.Feature.FeatureTaxon.Lineage lineage;
- @XmlAttribute(name = "scientificName", required = true)
- protected String scientificName;
- @XmlAttribute(name = "commonName")
- protected String commonName;
- @XmlAttribute(name = "taxId")
- protected BigInteger taxId;
-
- /**
- * Gets the value of the lineage property.
- *
- * @return
- * possible object is
- * {@link EntryType.Feature.FeatureTaxon.Lineage }
- *
- */
- public EntryType.Feature.FeatureTaxon.Lineage getLineage() {
- return lineage;
- }
-
- /**
- * Sets the value of the lineage property.
- *
- * @param value
- * allowed object is
- * {@link EntryType.Feature.FeatureTaxon.Lineage }
- *
- */
- public void setLineage(EntryType.Feature.FeatureTaxon.Lineage value) {
- this.lineage = value;
- }
-
- /**
- * Gets the value of the scientificName property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getScientificName() {
- return scientificName;
- }
-
- /**
- * Sets the value of the scientificName property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setScientificName(String value) {
- this.scientificName = value;
- }
-
- /**
- * Gets the value of the commonName property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getCommonName() {
- return commonName;
- }
-
- /**
- * Sets the value of the commonName property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setCommonName(String value) {
- this.commonName = value;
- }
-
- /**
- * Gets the value of the taxId property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getTaxId() {
- return taxId;
- }
-
- /**
- * Sets the value of the taxId property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setTaxId(BigInteger value) {
- this.taxId = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="taxon" maxOccurs="unbounded"&gt;
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * &lt;/element&gt;
- * &lt;/sequence&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "taxon"
- })
- public static class Lineage {
-
- @XmlElement(required = true)
- protected List<EntryType.Feature.FeatureTaxon.Lineage.Taxon> taxon;
-
- /**
- * Gets the value of the taxon property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the taxon property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getTaxon().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link EntryType.Feature.FeatureTaxon.Lineage.Taxon }
- *
- *
- */
- public List<EntryType.Feature.FeatureTaxon.Lineage.Taxon> getTaxon() {
- if (taxon == null) {
- taxon = new ArrayList<EntryType.Feature.FeatureTaxon.Lineage.Taxon>();
- }
- return this.taxon;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;attribute name="scientificName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Taxon {
-
- @XmlAttribute(name = "scientificName", required = true)
- protected String scientificName;
-
- /**
- * Gets the value of the scientificName property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getScientificName() {
- return scientificName;
- }
-
- /**
- * Sets the value of the scientificName property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setScientificName(String value) {
- this.scientificName = value;
- }
-
- }
-
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="value" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "value"
- })
- public static class Qualifier {
-
- protected String value;
- @XmlAttribute(name = "name", required = true)
- protected String name;
-
- /**
- * Gets the value of the value property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getValue() {
- return value;
- }
-
- /**
- * Sets the value of the value property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setValue(String value) {
- this.value = value;
- }
-
- /**
- * Gets the value of the name property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getName() {
- return name;
- }
-
- /**
- * Sets the value of the name property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setName(String value) {
- this.name = value;
- }
-
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * &lt;complexType&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="title" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="author" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="applicant" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="consortium" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="submissionDate" type="{http://www.w3.org/2001/XMLSchema}date" minOccurs="0"/&gt;
- * &lt;element name="journal" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="year" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="volume" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="issue" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="firstPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="lastPage" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="comment" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="referenceLocation" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="xref" type="{}XrefType" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="type" use="required"&gt;
- * &lt;simpleType&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
- * &lt;enumeration value="submission"/&gt;
- * &lt;enumeration value="book"/&gt;
- * &lt;enumeration value="article"/&gt;
- * &lt;enumeration value="patent"/&gt;
- * &lt;enumeration value="thesis"/&gt;
- * &lt;enumeration value="unpublished"/&gt;
- * &lt;/restriction&gt;
- * &lt;/simpleType&gt;
- * &lt;/attribute&gt;
- * &lt;attribute name="number" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" /&gt;
- * &lt;attribute name="location" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "title",
- "author",
- "applicant",
- "consortium",
- "submissionDate",
- "journal",
- "year",
- "volume",
- "issue",
- "firstPage",
- "lastPage",
- "comment",
- "referenceLocation",
- "xref"
- })
- public static class Reference {
-
- protected String title;
- protected List<String> author;
- protected List<String> applicant;
- protected String consortium;
- @XmlSchemaType(name = "date")
- protected XMLGregorianCalendar submissionDate;
- protected String journal;
- protected String year;
- protected String volume;
- protected String issue;
- protected String firstPage;
- protected String lastPage;
- protected String comment;
- protected String referenceLocation;
- protected List<XrefType> xref;
- @XmlAttribute(name = "type", required = true)
- protected String type;
- @XmlAttribute(name = "number", required = true)
- protected BigInteger number;
- @XmlAttribute(name = "location")
- protected String location;
-
- /**
- * Gets the value of the title property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getTitle() {
- return title;
- }
-
- /**
- * Sets the value of the title property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setTitle(String value) {
- this.title = value;
- }
-
- /**
- * Gets the value of the author property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the author property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getAuthor().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link String }
- *
- *
- */
- public List<String> getAuthor() {
- if (author == null) {
- author = new ArrayList<String>();
- }
- return this.author;
- }
-
- /**
- * Gets the value of the applicant property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the applicant property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getApplicant().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link String }
- *
- *
- */
- public List<String> getApplicant() {
- if (applicant == null) {
- applicant = new ArrayList<String>();
- }
- return this.applicant;
- }
-
- /**
- * Gets the value of the consortium property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getConsortium() {
- return consortium;
- }
-
- /**
- * Sets the value of the consortium property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setConsortium(String value) {
- this.consortium = value;
- }
-
- /**
- * Gets the value of the submissionDate property.
- *
- * @return
- * possible object is
- * {@link XMLGregorianCalendar }
- *
- */
- public XMLGregorianCalendar getSubmissionDate() {
- return submissionDate;
- }
-
- /**
- * Sets the value of the submissionDate property.
- *
- * @param value
- * allowed object is
- * {@link XMLGregorianCalendar }
- *
- */
- public void setSubmissionDate(XMLGregorianCalendar value) {
- this.submissionDate = value;
- }
-
- /**
- * Gets the value of the journal property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getJournal() {
- return journal;
- }
-
- /**
- * Sets the value of the journal property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setJournal(String value) {
- this.journal = value;
- }
-
- /**
- * Gets the value of the year property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getYear() {
- return year;
- }
-
- /**
- * Sets the value of the year property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setYear(String value) {
- this.year = value;
- }
-
- /**
- * Gets the value of the volume property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getVolume() {
- return volume;
- }
-
- /**
- * Sets the value of the volume property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setVolume(String value) {
- this.volume = value;
- }
-
- /**
- * Gets the value of the issue property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getIssue() {
- return issue;
- }
-
- /**
- * Sets the value of the issue property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setIssue(String value) {
- this.issue = value;
- }
-
- /**
- * Gets the value of the firstPage property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getFirstPage() {
- return firstPage;
- }
-
- /**
- * Sets the value of the firstPage property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setFirstPage(String value) {
- this.firstPage = value;
- }
-
- /**
- * Gets the value of the lastPage property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getLastPage() {
- return lastPage;
- }
-
- /**
- * Sets the value of the lastPage property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setLastPage(String value) {
- this.lastPage = value;
- }
-
- /**
- * Gets the value of the comment property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getComment() {
- return comment;
- }
-
- /**
- * Sets the value of the comment property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setComment(String value) {
- this.comment = value;
- }
-
- /**
- * Gets the value of the referenceLocation property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getReferenceLocation() {
- return referenceLocation;
- }
-
- /**
- * Sets the value of the referenceLocation property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setReferenceLocation(String value) {
- this.referenceLocation = value;
- }
-
- /**
- * Gets the value of the xref property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the xref property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getXref().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link XrefType }
- *
- *
- */
- public List<XrefType> getXref() {
- if (xref == null) {
- xref = new ArrayList<XrefType>();
- }
- return this.xref;
- }
-
- /**
- * Gets the value of the type property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getType() {
- return type;
- }
-
- /**
- * Sets the value of the type property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setType(String value) {
- this.type = value;
- }
-
- /**
- * Gets the value of the number property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getNumber() {
- return number;
- }
-
- /**
- * Sets the value of the number property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setNumber(BigInteger value) {
- this.number = value;
- }
-
- /**
- * Gets the value of the location property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getLocation() {
- return location;
- }
-
- /**
- * Sets the value of the location property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setLocation(String value) {
- this.location = value;
- }
-
- }
+ }
}
git://source.jalview.org / jalview.git / blobdiff