// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2022.02.07 at 04:44:47 PM GMT
+// Generated on: 2023.11.01 at 07:03:09 PM GMT
//
* <attribute name="ignoreGapsinConsensus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
* <attribute name="startRes" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="startSeq" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="charWidth" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="charHeight" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="fontName" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="fontSize" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="fontStyle" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="idWidth" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="idWidthManuallyAdjusted" type="{http://www.w3.org/2001/XMLSchema}boolean" />
* <attribute name="scaleProteinAsCdna" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
* <attribute name="viewName" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="sequenceSetId" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="markUnlinked" type="{http://www.w3.org/2001/XMLSchema}boolean" />
* <attribute name="fitToWindow" type="{http://www.w3.org/2001/XMLSchema}boolean" />
* <attribute name="currentTree" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ * <attribute name="columnWise" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * <attribute name="columnReference" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}ID" />
* <attribute name="linkToAllViews" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
* </restriction>
* </element>
* <element name="pcaData" type="{www.jalview.org}PcaDataType"/>
* </sequence>
- * <attGroup ref="{www.jalview.org}swingwindow"/>
* <attGroup ref="{www.jalview.org}SimilarityParams"/>
+ * <attGroup ref="{www.jalview.org}swingwindow"/>
* <attribute name="title" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="scoreModelName" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="xDim" type="{http://www.w3.org/2001/XMLSchema}int" />
* </element>
* <element name="pcaData" type="{www.jalview.org}PcaDataType"/>
* </sequence>
- * <attGroup ref="{www.jalview.org}swingwindow"/>
* <attGroup ref="{www.jalview.org}SimilarityParams"/>
+ * <attGroup ref="{www.jalview.org}swingwindow"/>
* <attribute name="title" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="scoreModelName" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="xDim" type="{http://www.w3.org/2001/XMLSchema}int" />
protected Boolean showLabels;
@XmlAttribute(name = "linkToAllViews")
protected Boolean linkToAllViews;
- @XmlAttribute(name = "width")
- protected Integer width;
- @XmlAttribute(name = "height")
- protected Integer height;
- @XmlAttribute(name = "xpos")
- protected Integer xpos;
- @XmlAttribute(name = "ypos")
- protected Integer ypos;
@XmlAttribute(name = "includeGaps")
protected Boolean includeGaps;
@XmlAttribute(name = "matchGaps")
protected Boolean includeGappedColumns;
@XmlAttribute(name = "denominateByShortestLength")
protected Boolean denominateByShortestLength;
+ @XmlAttribute(name = "width")
+ protected Integer width;
+ @XmlAttribute(name = "height")
+ protected Integer height;
+ @XmlAttribute(name = "xpos")
+ protected Integer xpos;
+ @XmlAttribute(name = "ypos")
+ protected Integer ypos;
/**
* Gets the value of the sequencePoint property.
}
/**
- * Gets the value of the width property.
+ * Gets the value of the includeGaps property.
*
* @return
* possible object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public Integer getWidth() {
- return width;
+ public Boolean isIncludeGaps() {
+ return includeGaps;
}
/**
- * Sets the value of the width property.
+ * Sets the value of the includeGaps property.
*
* @param value
* allowed object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public void setWidth(Integer value) {
- this.width = value;
+ public void setIncludeGaps(Boolean value) {
+ this.includeGaps = value;
}
/**
- * Gets the value of the height property.
+ * Gets the value of the matchGaps property.
*
* @return
* possible object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public Integer getHeight() {
- return height;
+ public Boolean isMatchGaps() {
+ return matchGaps;
}
/**
- * Sets the value of the height property.
+ * Sets the value of the matchGaps property.
*
* @param value
* allowed object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public void setHeight(Integer value) {
- this.height = value;
+ public void setMatchGaps(Boolean value) {
+ this.matchGaps = value;
}
/**
- * Gets the value of the xpos property.
+ * Gets the value of the includeGappedColumns property.
*
* @return
* possible object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public Integer getXpos() {
- return xpos;
+ public Boolean isIncludeGappedColumns() {
+ return includeGappedColumns;
}
/**
- * Sets the value of the xpos property.
+ * Sets the value of the includeGappedColumns property.
*
* @param value
* allowed object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public void setXpos(Integer value) {
- this.xpos = value;
+ public void setIncludeGappedColumns(Boolean value) {
+ this.includeGappedColumns = value;
}
/**
- * Gets the value of the ypos property.
+ * Gets the value of the denominateByShortestLength property.
*
* @return
* possible object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public Integer getYpos() {
- return ypos;
+ public Boolean isDenominateByShortestLength() {
+ return denominateByShortestLength;
}
/**
- * Sets the value of the ypos property.
+ * Sets the value of the denominateByShortestLength property.
*
* @param value
* allowed object is
- * {@link Integer }
+ * {@link Boolean }
*
*/
- public void setYpos(Integer value) {
- this.ypos = value;
+ public void setDenominateByShortestLength(Boolean value) {
+ this.denominateByShortestLength = value;
}
/**
- * Gets the value of the includeGaps property.
+ * Gets the value of the width property.
*
* @return
* possible object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public Boolean isIncludeGaps() {
- return includeGaps;
+ public Integer getWidth() {
+ return width;
}
/**
- * Sets the value of the includeGaps property.
+ * Sets the value of the width property.
*
* @param value
* allowed object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public void setIncludeGaps(Boolean value) {
- this.includeGaps = value;
+ public void setWidth(Integer value) {
+ this.width = value;
}
/**
- * Gets the value of the matchGaps property.
+ * Gets the value of the height property.
*
* @return
* possible object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public Boolean isMatchGaps() {
- return matchGaps;
+ public Integer getHeight() {
+ return height;
}
/**
- * Sets the value of the matchGaps property.
+ * Sets the value of the height property.
*
* @param value
* allowed object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public void setMatchGaps(Boolean value) {
- this.matchGaps = value;
+ public void setHeight(Integer value) {
+ this.height = value;
}
/**
- * Gets the value of the includeGappedColumns property.
+ * Gets the value of the xpos property.
*
* @return
* possible object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public Boolean isIncludeGappedColumns() {
- return includeGappedColumns;
+ public Integer getXpos() {
+ return xpos;
}
/**
- * Sets the value of the includeGappedColumns property.
+ * Sets the value of the xpos property.
*
* @param value
* allowed object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public void setIncludeGappedColumns(Boolean value) {
- this.includeGappedColumns = value;
+ public void setXpos(Integer value) {
+ this.xpos = value;
}
/**
- * Gets the value of the denominateByShortestLength property.
+ * Gets the value of the ypos property.
*
* @return
* possible object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public Boolean isDenominateByShortestLength() {
- return denominateByShortestLength;
+ public Integer getYpos() {
+ return ypos;
}
/**
- * Sets the value of the denominateByShortestLength property.
+ * Sets the value of the ypos property.
*
* @param value
* allowed object is
- * {@link Boolean }
+ * {@link Integer }
*
*/
- public void setDenominateByShortestLength(Boolean value) {
- this.denominateByShortestLength = value;
+ public void setYpos(Integer value) {
+ this.ypos = value;
}
* <attribute name="markUnlinked" type="{http://www.w3.org/2001/XMLSchema}boolean" />
* <attribute name="fitToWindow" type="{http://www.w3.org/2001/XMLSchema}boolean" />
* <attribute name="currentTree" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ * <attribute name="columnWise" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
+ * <attribute name="columnReference" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}ID" />
* <attribute name="linkToAllViews" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
* </restriction>
protected Boolean fitToWindow;
@XmlAttribute(name = "currentTree")
protected Boolean currentTree;
+ @XmlAttribute(name = "columnWise")
+ protected Boolean columnWise;
+ @XmlAttribute(name = "columnReference")
+ protected String columnReference;
@XmlAttribute(name = "id")
@XmlJavaTypeAdapter(CollapsedStringAdapter.class)
@XmlID
}
/**
+ * Gets the value of the columnWise property.
+ *
+ * @return
+ * possible object is
+ * {@link Boolean }
+ *
+ */
+ public boolean isColumnWise() {
+ if (columnWise == null) {
+ return false;
+ } else {
+ return columnWise;
+ }
+ }
+
+ /**
+ * Sets the value of the columnWise property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Boolean }
+ *
+ */
+ public void setColumnWise(Boolean value) {
+ this.columnWise = value;
+ }
+
+ /**
+ * Gets the value of the columnReference property.
+ *
+ * @return
+ * possible object is
+ * {@link String }
+ *
+ */
+ public String getColumnReference() {
+ return columnReference;
+ }
+
+ /**
+ * Sets the value of the columnReference property.
+ *
+ * @param value
+ * allowed object is
+ * {@link String }
+ *
+ */
+ public void setColumnReference(String value) {
+ this.columnReference = value;
+ }
+
+ /**
* Gets the value of the id property.
*
* @return
* <attribute name="ignoreGapsinConsensus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
* <attribute name="startRes" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="startSeq" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="charWidth" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="charHeight" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="fontName" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="fontSize" type="{http://www.w3.org/2001/XMLSchema}int" />
* <attribute name="fontStyle" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="idWidth" type="{http://www.w3.org/2001/XMLSchema}int" />
+ * <attribute name="idWidthManuallyAdjusted" type="{http://www.w3.org/2001/XMLSchema}boolean" />
* <attribute name="scaleProteinAsCdna" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
* <attribute name="viewName" type="{http://www.w3.org/2001/XMLSchema}string" />
* <attribute name="sequenceSetId" type="{http://www.w3.org/2001/XMLSchema}string" />
protected Integer startRes;
@XmlAttribute(name = "startSeq")
protected Integer startSeq;
+ @XmlAttribute(name = "charWidth")
+ protected Integer charWidth;
+ @XmlAttribute(name = "charHeight")
+ protected Integer charHeight;
@XmlAttribute(name = "fontName")
protected String fontName;
@XmlAttribute(name = "fontSize")
protected Integer fontSize;
@XmlAttribute(name = "fontStyle")
protected Integer fontStyle;
+ @XmlAttribute(name = "idWidth")
+ protected Integer idWidth;
+ @XmlAttribute(name = "idWidthManuallyAdjusted")
+ protected Boolean idWidthManuallyAdjusted;
@XmlAttribute(name = "scaleProteinAsCdna")
protected Boolean scaleProteinAsCdna;
@XmlAttribute(name = "viewName")
}
/**
+ * Gets the value of the charWidth property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getCharWidth() {
+ return charWidth;
+ }
+
+ /**
+ * Sets the value of the charWidth property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setCharWidth(Integer value) {
+ this.charWidth = value;
+ }
+
+ /**
+ * Gets the value of the charHeight property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getCharHeight() {
+ return charHeight;
+ }
+
+ /**
+ * Sets the value of the charHeight property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setCharHeight(Integer value) {
+ this.charHeight = value;
+ }
+
+ /**
* Gets the value of the fontName property.
*
* @return
}
/**
+ * Gets the value of the idWidth property.
+ *
+ * @return
+ * possible object is
+ * {@link Integer }
+ *
+ */
+ public Integer getIdWidth() {
+ return idWidth;
+ }
+
+ /**
+ * Sets the value of the idWidth property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Integer }
+ *
+ */
+ public void setIdWidth(Integer value) {
+ this.idWidth = value;
+ }
+
+ /**
+ * Gets the value of the idWidthManuallyAdjusted property.
+ *
+ * @return
+ * possible object is
+ * {@link Boolean }
+ *
+ */
+ public Boolean isIdWidthManuallyAdjusted() {
+ return idWidthManuallyAdjusted;
+ }
+
+ /**
+ * Sets the value of the idWidthManuallyAdjusted property.
+ *
+ * @param value
+ * allowed object is
+ * {@link Boolean }
+ *
+ */
+ public void setIdWidthManuallyAdjusted(Boolean value) {
+ this.idWidthManuallyAdjusted = value;
+ }
+
+ /**
* Gets the value of the scaleProteinAsCdna property.
*
* @return
git://source.jalview.org / jalview.git / blobdiff