//
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
+// See https://eclipse-ee4j.github.io/jaxb-ri
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2023.05.13 at 06:58:41 PM BST
+// Generated on: 2023.11.01 at 07:03:09 PM GMT
//
-
package jalview.xml.binding.jalview;
import java.math.BigInteger;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlType;
-
/**
- * <p>
- * Java class for MatrixType complex type.
+ * Represents matrix data imported to Jalview, and the results of any derived
+ * calculations (independent of a particular view on the matrix).
+ *
*
- * <p>
- * The following schema fragment specifies the expected content contained within
- * this class.
+ * <p>Java class for MatrixType complex type.
*
- * <pre>
- * <complexType name="MatrixType">
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="elements" type="{http://www.w3.org/2001/XMLSchema}string"/>
- * <element name="groups" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="newick" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="property" type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded" minOccurs="0"/>
- * <element name="mapping" type="{www.vamsas.ac.uk/jalview/version2}mapListType" minOccurs="0"/>
- * </sequence>
- * <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="rows" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
- * <attribute name="treeMethod" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" />
- * <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ * <p>The following schema fragment specifies the expected content
+ * contained within this class.
+ *
+ * <pre> &lt;complexType name="MatrixType"&gt;
+ * &lt;complexContent&gt; &lt;restriction
+ * base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
+ * &lt;sequence&gt; &lt;element name="elements"
+ * type="{http://www.w3.org/2001/XMLSchema}string"/&gt; &lt;element
+ * name="groups" type="{http://www.w3.org/2001/XMLSchema}string"
+ * maxOccurs="unbounded" minOccurs="0"/&gt; &lt;element name="newick"
+ * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"
+ * minOccurs="0"/&gt; &lt;element name="property"
+ * type="{www.vamsas.ac.uk/jalview/version2}property" maxOccurs="unbounded"
+ * minOccurs="0"/&gt; &lt;/sequence&gt; &lt;attribute
+ * name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string"
+ * /&gt; &lt;attribute name="rows" use="required"
+ * type="{http://www.w3.org/2001/XMLSchema}integer" /&gt; &lt;attribute
+ * name="cols" use="required" type="{http://www.w3.org/2001/XMLSchema}integer"
+ * /&gt; &lt;attribute name="treeMethod"
+ * type="{http://www.w3.org/2001/XMLSchema}string" /&gt; &lt;attribute
+ * name="cutHeight" type="{http://www.w3.org/2001/XMLSchema}double" /&gt;
+ * &lt;attribute name="id" use="required"
+ * type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
+ * &lt;/restriction&gt; &lt;/complexContent&gt;
+ * &lt;/complexType&gt; </pre>
*
*
*/
@XmlType(
name = "MatrixType",
propOrder =
- { "elements", "groups", "newick", "property", "mapping" })
+ { "elements", "groups", "newick", "property" })
public class MatrixType
{
protected List<Property> property;
- protected MapListType mapping;
-
@XmlAttribute(name = "type", required = true)
protected String type;
@XmlAttribute(name = "cutHeight")
protected Double cutHeight;
- @XmlAttribute(name = "id")
+ @XmlAttribute(name = "id", required = true)
protected String id;
/**
/**
* Gets the value of the groups property.
*
- * <p>
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
- * for the groups property.
- *
- * <p>
- * For example, to add a new item, do as follows:
+ * <p> This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will be
+ * present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the groups property.
*
- * <pre>
- * getGroups().add(newItem);
- * </pre>
+ * <p> For example, to add a new item, do as follows: <pre>
+ * getGroups().add(newItem); </pre>
*
*
- * <p>
- * Objects of the following type(s) are allowed in the list {@link String }
+ * <p> Objects of the following type(s) are allowed in the list
+ * {@link String }
*
*
*/
/**
* Gets the value of the newick property.
*
- * <p>
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
- * for the newick property.
+ * <p> This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will be
+ * present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the newick property.
*
- * <p>
- * For example, to add a new item, do as follows:
+ * <p> For example, to add a new item, do as follows: <pre>
+ * getNewick().add(newItem); </pre>
*
- * <pre>
- * getNewick().add(newItem);
- * </pre>
*
- *
- * <p>
- * Objects of the following type(s) are allowed in the list {@link String }
+ * <p> Objects of the following type(s) are allowed in the list
+ * {@link String }
*
*
*/
/**
* Gets the value of the property property.
*
- * <p>
- * This accessor method returns a reference to the live list, not a snapshot.
- * Therefore any modification you make to the returned list will be present
- * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
- * for the property property.
- *
- * <p>
- * For example, to add a new item, do as follows:
+ * <p> This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will be
+ * present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the property property.
*
- * <pre>
- * getProperty().add(newItem);
- * </pre>
+ * <p> For example, to add a new item, do as follows: <pre>
+ * getProperty().add(newItem); </pre>
*
*
- * <p>
- * Objects of the following type(s) are allowed in the list {@link Property }
+ * <p> Objects of the following type(s) are allowed in the list
+ * {@link Property }
*
*
*/
}
/**
- * Gets the value of the mapping property.
- *
- * @return possible object is {@link MapListType }
- *
- */
- public MapListType getMapping()
- {
- return mapping;
- }
-
- /**
- * Sets the value of the mapping property.
- *
- * @param value
- * allowed object is {@link MapListType }
- *
- */
- public void setMapping(MapListType value)
- {
- this.mapping = value;
- }
-
- /**
* Gets the value of the type property.
*
* @return possible object is {@link String }