//
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
-// See https://eclipse-ee4j.github.io/jaxb-ri
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
// Any modifications to this file will be lost upon recompilation of the source schema.
-// Generated on: 2022.02.07 at 04:44:21 PM GMT
+// Generated on: 2023.05.13 at 06:58:42 PM BST
//
-
package jalview.xml.binding.uniprot;
import java.util.ArrayList;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlType;
-
/**
- * Describes different types of sequence annotations.
- * Equivalent to the flat file FT-line.
+ * Describes different types of sequence annotations. Equivalent to the flat
+ * file FT-line.
*
- * <p>Java class for featureType complex type.
+ * <p>
+ * Java class for featureType complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>
+ * The following schema fragment specifies the expected content contained within
+ * this class.
*
- * <pre>
- * &lt;complexType name="featureType"&gt;
- * &lt;complexContent&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
- * &lt;sequence&gt;
- * &lt;element name="original" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&gt;
- * &lt;element name="variation" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/&gt;
- * &lt;element name="location" type="{http://uniprot.org/uniprot}locationType"/&gt;
- * &lt;/sequence&gt;
- * &lt;attribute name="type" use="required"&gt;
- * &lt;simpleType&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
- * &lt;enumeration value="active site"/&gt;
- * &lt;enumeration value="binding site"/&gt;
- * &lt;enumeration value="calcium-binding region"/&gt;
- * &lt;enumeration value="chain"/&gt;
- * &lt;enumeration value="coiled-coil region"/&gt;
- * &lt;enumeration value="compositionally biased region"/&gt;
- * &lt;enumeration value="cross-link"/&gt;
- * &lt;enumeration value="disulfide bond"/&gt;
- * &lt;enumeration value="DNA-binding region"/&gt;
- * &lt;enumeration value="domain"/&gt;
- * &lt;enumeration value="glycosylation site"/&gt;
- * &lt;enumeration value="helix"/&gt;
- * &lt;enumeration value="initiator methionine"/&gt;
- * &lt;enumeration value="lipid moiety-binding region"/&gt;
- * &lt;enumeration value="metal ion-binding site"/&gt;
- * &lt;enumeration value="modified residue"/&gt;
- * &lt;enumeration value="mutagenesis site"/&gt;
- * &lt;enumeration value="non-consecutive residues"/&gt;
- * &lt;enumeration value="non-terminal residue"/&gt;
- * &lt;enumeration value="nucleotide phosphate-binding region"/&gt;
- * &lt;enumeration value="peptide"/&gt;
- * &lt;enumeration value="propeptide"/&gt;
- * &lt;enumeration value="region of interest"/&gt;
- * &lt;enumeration value="repeat"/&gt;
- * &lt;enumeration value="non-standard amino acid"/&gt;
- * &lt;enumeration value="sequence conflict"/&gt;
- * &lt;enumeration value="sequence variant"/&gt;
- * &lt;enumeration value="short sequence motif"/&gt;
- * &lt;enumeration value="signal peptide"/&gt;
- * &lt;enumeration value="site"/&gt;
- * &lt;enumeration value="splice variant"/&gt;
- * &lt;enumeration value="strand"/&gt;
- * &lt;enumeration value="topological domain"/&gt;
- * &lt;enumeration value="transit peptide"/&gt;
- * &lt;enumeration value="transmembrane region"/&gt;
- * &lt;enumeration value="turn"/&gt;
- * &lt;enumeration value="unsure residue"/&gt;
- * &lt;enumeration value="zinc finger region"/&gt;
- * &lt;enumeration value="intramembrane region"/&gt;
- * &lt;/restriction&gt;
- * &lt;/simpleType&gt;
- * &lt;/attribute&gt;
- * &lt;attribute name="status"&gt;
- * &lt;simpleType&gt;
- * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
- * &lt;enumeration value="by similarity"/&gt;
- * &lt;enumeration value="probable"/&gt;
- * &lt;enumeration value="potential"/&gt;
- * &lt;/restriction&gt;
- * &lt;/simpleType&gt;
- * &lt;/attribute&gt;
- * &lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" /&gt;
- * &lt;attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
- * &lt;/restriction&gt;
- * &lt;/complexContent&gt;
- * &lt;/complexType&gt;
- * </pre>
+ * <pre>
+ * <complexType name="featureType">
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="original" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ * <element name="variation" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ * <element name="location" type="{http://uniprot.org/uniprot}locationType"/>
+ * </sequence>
+ * <attribute name="type" use="required">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="active site"/>
+ * <enumeration value="binding site"/>
+ * <enumeration value="calcium-binding region"/>
+ * <enumeration value="chain"/>
+ * <enumeration value="coiled-coil region"/>
+ * <enumeration value="compositionally biased region"/>
+ * <enumeration value="cross-link"/>
+ * <enumeration value="disulfide bond"/>
+ * <enumeration value="DNA-binding region"/>
+ * <enumeration value="domain"/>
+ * <enumeration value="glycosylation site"/>
+ * <enumeration value="helix"/>
+ * <enumeration value="initiator methionine"/>
+ * <enumeration value="lipid moiety-binding region"/>
+ * <enumeration value="metal ion-binding site"/>
+ * <enumeration value="modified residue"/>
+ * <enumeration value="mutagenesis site"/>
+ * <enumeration value="non-consecutive residues"/>
+ * <enumeration value="non-terminal residue"/>
+ * <enumeration value="nucleotide phosphate-binding region"/>
+ * <enumeration value="peptide"/>
+ * <enumeration value="propeptide"/>
+ * <enumeration value="region of interest"/>
+ * <enumeration value="repeat"/>
+ * <enumeration value="non-standard amino acid"/>
+ * <enumeration value="sequence conflict"/>
+ * <enumeration value="sequence variant"/>
+ * <enumeration value="short sequence motif"/>
+ * <enumeration value="signal peptide"/>
+ * <enumeration value="site"/>
+ * <enumeration value="splice variant"/>
+ * <enumeration value="strand"/>
+ * <enumeration value="topological domain"/>
+ * <enumeration value="transit peptide"/>
+ * <enumeration value="transmembrane region"/>
+ * <enumeration value="turn"/>
+ * <enumeration value="unsure residue"/>
+ * <enumeration value="zinc finger region"/>
+ * <enumeration value="intramembrane region"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="status">
+ * <simpleType>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ * <enumeration value="by similarity"/>
+ * <enumeration value="probable"/>
+ * <enumeration value="potential"/>
+ * </restriction>
+ * </simpleType>
+ * </attribute>
+ * <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ * <attribute name="ref" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
*
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "featureType", propOrder = {
- "original",
- "variation",
- "location"
-})
-public class FeatureType {
+@XmlType(
+ name = "featureType",
+ propOrder =
+ { "original", "variation", "location" })
+public class FeatureType
+{
- protected String original;
- protected List<String> variation;
- @XmlElement(required = true)
- protected LocationType location;
- @XmlAttribute(name = "type", required = true)
- protected String type;
- @XmlAttribute(name = "status")
- protected String status;
- @XmlAttribute(name = "id")
- protected String id;
- @XmlAttribute(name = "description")
- protected String description;
- @XmlAttribute(name = "evidence")
- protected List<Integer> evidence;
- @XmlAttribute(name = "ref")
- protected String ref;
+ protected String original;
- /**
- * Gets the value of the original property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getOriginal() {
- return original;
- }
+ protected List<String> variation;
- /**
- * Sets the value of the original property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setOriginal(String value) {
- this.original = value;
- }
+ @XmlElement(required = true)
+ protected LocationType location;
- /**
- * Gets the value of the variation property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the variation property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getVariation().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link String }
- *
- *
- */
- public List<String> getVariation() {
- if (variation == null) {
- variation = new ArrayList<String>();
- }
- return this.variation;
- }
+ @XmlAttribute(name = "type", required = true)
+ protected String type;
- /**
- * Gets the value of the location property.
- *
- * @return
- * possible object is
- * {@link LocationType }
- *
- */
- public LocationType getLocation() {
- return location;
- }
+ @XmlAttribute(name = "status")
+ protected String status;
- /**
- * Sets the value of the location property.
- *
- * @param value
- * allowed object is
- * {@link LocationType }
- *
- */
- public void setLocation(LocationType value) {
- this.location = value;
- }
+ @XmlAttribute(name = "id")
+ protected String id;
- /**
- * Gets the value of the type property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getType() {
- return type;
- }
+ @XmlAttribute(name = "description")
+ protected String description;
- /**
- * Sets the value of the type property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setType(String value) {
- this.type = value;
- }
+ @XmlAttribute(name = "evidence")
+ protected List<Integer> evidence;
- /**
- * Gets the value of the status property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getStatus() {
- return status;
- }
+ @XmlAttribute(name = "ref")
+ protected String ref;
- /**
- * Sets the value of the status property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setStatus(String value) {
- this.status = value;
- }
+ /**
+ * Gets the value of the original property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getOriginal()
+ {
+ return original;
+ }
- /**
- * Gets the value of the id property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getId() {
- return id;
- }
+ /**
+ * Sets the value of the original property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setOriginal(String value)
+ {
+ this.original = value;
+ }
- /**
- * Sets the value of the id property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setId(String value) {
- this.id = value;
+ /**
+ * Gets the value of the variation property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the variation property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getVariation().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link String }
+ *
+ *
+ */
+ public List<String> getVariation()
+ {
+ if (variation == null)
+ {
+ variation = new ArrayList<String>();
}
+ return this.variation;
+ }
- /**
- * Gets the value of the description property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getDescription() {
- return description;
- }
+ /**
+ * Gets the value of the location property.
+ *
+ * @return possible object is {@link LocationType }
+ *
+ */
+ public LocationType getLocation()
+ {
+ return location;
+ }
- /**
- * Sets the value of the description property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setDescription(String value) {
- this.description = value;
- }
+ /**
+ * Sets the value of the location property.
+ *
+ * @param value
+ * allowed object is {@link LocationType }
+ *
+ */
+ public void setLocation(LocationType value)
+ {
+ this.location = value;
+ }
- /**
- * Gets the value of the evidence property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the evidence property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getEvidence().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Integer }
- *
- *
- */
- public List<Integer> getEvidence() {
- if (evidence == null) {
- evidence = new ArrayList<Integer>();
- }
- return this.evidence;
- }
+ /**
+ * Gets the value of the type property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getType()
+ {
+ return type;
+ }
- /**
- * Gets the value of the ref property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getRef() {
- return ref;
- }
+ /**
+ * Sets the value of the type property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setType(String value)
+ {
+ this.type = value;
+ }
+
+ /**
+ * Gets the value of the status property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getStatus()
+ {
+ return status;
+ }
+
+ /**
+ * Sets the value of the status property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setStatus(String value)
+ {
+ this.status = value;
+ }
- /**
- * Sets the value of the ref property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setRef(String value) {
- this.ref = value;
+ /**
+ * Gets the value of the id property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getId()
+ {
+ return id;
+ }
+
+ /**
+ * Sets the value of the id property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setId(String value)
+ {
+ this.id = value;
+ }
+
+ /**
+ * Gets the value of the description property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDescription()
+ {
+ return description;
+ }
+
+ /**
+ * Sets the value of the description property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDescription(String value)
+ {
+ this.description = value;
+ }
+
+ /**
+ * Gets the value of the evidence property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the evidence property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getEvidence().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list {@link Integer }
+ *
+ *
+ */
+ public List<Integer> getEvidence()
+ {
+ if (evidence == null)
+ {
+ evidence = new ArrayList<Integer>();
}
+ return this.evidence;
+ }
+
+ /**
+ * Gets the value of the ref property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getRef()
+ {
+ return ref;
+ }
+
+ /**
+ * Sets the value of the ref property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setRef(String value)
+ {
+ this.ref = value;
+ }
}
git://source.jalview.org / jalview.git / blobdiff