*/
package mc_view;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Vector;
+
+import jalview.bin.Console;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.DBRefSource;
import jalview.datamodel.SequenceI;
import jalview.io.StructureFile;
import jalview.util.MessageManager;
-import java.io.IOException;
-import java.util.ArrayList;
-import java.util.Hashtable;
-import java.util.List;
-import java.util.Vector;
-
public class PDBfile extends StructureFile
{
private static String CALC_ID_PREFIX = "JalviewPDB";
DataSourceType sourceType) throws IOException
{
super(false, dataObject, sourceType);
+ Console.debug("***** PDBfile constructor");
addSettings(addAlignmentAnnotations, predictSecStr, externalSecStr);
+ Console.debug("***** About to doParse() 1");
doParse();
}
{
super(false, source);
addSettings(addAlignmentAnnotations, predictSecStr, externalSecStr);
+ Console.debug("***** About to doParse() 2");
doParse();
}