New schema, new objects

[jalview.git] / src / org / vamsas / objects / core / AlignmentDescriptor.java

diff --git a/src/org/vamsas/objects/core/AlignmentDescriptor.java b/src/org/vamsas/objects/core/AlignmentDescriptor.java
index 46c8c21..c02d0e7 100755 (executable)
--- a/src/org/vamsas/objects/core/AlignmentDescriptor.java
+++ b/src/org/vamsas/objects/core/AlignmentDescriptor.java
@@ -1,6 +1,6 @@
 /*\r
  * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
  * Schema.\r
  * $Id$\r
  */\r
@@ -53,8 +53,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
      //- Constructors -/\r
     //----------------/\r
 \r
-    public AlignmentDescriptor() \r
-     {\r
+    public AlignmentDescriptor() {\r
         super();\r
         nsURI = "http://www.vamsas.org";\r
         xmlName = "Alignment";\r
@@ -62,14 +61,14 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         //-- set grouping compositor\r
         setCompositorAsSequence();\r
         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
-        org.exolab.castor.mapping.FieldHandler             handler        = null;\r
+        org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
         //-- initialize attribute descriptors\r
         \r
         //-- _gapChar\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
         desc.setImmutable(true);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -90,10 +89,9 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return null;\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
         desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
         addFieldDescriptor(desc);\r
         \r
         //-- validation code for: _gapChar\r
@@ -107,7 +105,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         desc.setValidator(fieldValidator);\r
         //-- _aligned\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -135,9 +133,8 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return null;\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
-        desc.setMultivalued(false);\r
         addFieldDescriptor(desc);\r
         \r
         //-- validation code for: _aligned\r
@@ -150,7 +147,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         //-- _id\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
         this.identity = desc;\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -171,9 +168,8 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return new java.lang.String();\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
-        desc.setMultivalued(false);\r
         addFieldDescriptor(desc);\r
         \r
         //-- validation code for: _id\r
@@ -185,7 +181,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         \r
         //-- _alignmentAnnotationsList\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentAnnotations.class, "_alignmentAnnotationsList", "AlignmentAnnotations", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -206,7 +202,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return new org.vamsas.objects.core.AlignmentAnnotations();\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
         desc.setNameSpaceURI("http://www.vamsas.org");\r
         desc.setMultivalued(true);\r
@@ -220,7 +216,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         desc.setValidator(fieldValidator);\r
         //-- _treeList\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -241,7 +237,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return new org.vamsas.objects.core.Tree();\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
         desc.setNameSpaceURI("http://www.vamsas.org");\r
         desc.setMultivalued(true);\r
@@ -255,7 +251,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         desc.setValidator(fieldValidator);\r
         //-- _alignmentSequenceList\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -276,7 +272,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return new org.vamsas.objects.core.AlignmentSequence();\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
         desc.setNameSpaceURI("http://www.vamsas.org");\r
         desc.setRequired(true);\r
@@ -291,7 +287,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
         desc.setValidator(fieldValidator);\r
         //-- _provenance\r
         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
             public java.lang.Object getValue( java.lang.Object object ) \r
                 throws IllegalStateException\r
             {\r
@@ -312,7 +308,7 @@ public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDesc
             public java.lang.Object newInstance( java.lang.Object parent ) {\r
                 return new org.vamsas.objects.core.Provenance();\r
             }\r
-        };\r
+        } );\r
         desc.setHandler(handler);\r
         desc.setNameSpaceURI("http://www.vamsas.org");\r
         desc.setRequired(true);\r