New schema, new objects

[jalview.git] / src / org / vamsas / objects / core / DataSet.java

diff --git a/src/org/vamsas/objects/core/DataSet.java b/src/org/vamsas/objects/core/DataSet.java
index b3d6671..4de0939 100755 (executable)
--- a/src/org/vamsas/objects/core/DataSet.java
+++ b/src/org/vamsas/objects/core/DataSet.java
@@ -1,6 +1,6 @@
 /*\r
  * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
  * Schema.\r
  * $Id$\r
  */\r
@@ -70,8 +70,7 @@ public class DataSet implements java.io.Serializable {
      //- Constructors -/\r
     //----------------/\r
 \r
-    public DataSet() \r
-     {\r
+    public DataSet() {\r
         super();\r
         _sequenceList = new Vector();\r
         _dataSetAnnotationsList = new Vector();\r
@@ -253,7 +252,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _alignmentList.size())) {\r
-            throw new IndexOutOfBoundsException("getAlignment: Index value '"+index+"' not in range [0.."+_alignmentList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         \r
         return (org.vamsas.objects.core.Alignment) _alignmentList.elementAt(index);\r
@@ -301,7 +300,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _dataSetAnnotationsList.size())) {\r
-            throw new IndexOutOfBoundsException("getDataSetAnnotations: Index value '"+index+"' not in range [0.."+_dataSetAnnotationsList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         \r
         return (org.vamsas.objects.core.DataSetAnnotations) _dataSetAnnotationsList.elementAt(index);\r
@@ -371,7 +370,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _sequenceList.size())) {\r
-            throw new IndexOutOfBoundsException("getSequence: Index value '"+index+"' not in range [0.."+_sequenceList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         \r
         return (org.vamsas.objects.core.Sequence) _sequenceList.elementAt(index);\r
@@ -419,7 +418,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _treeList.size())) {\r
-            throw new IndexOutOfBoundsException("getTree: Index value '"+index+"' not in range [0.."+_treeList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         \r
         return (org.vamsas.objects.core.Tree) _treeList.elementAt(index);\r
@@ -609,7 +608,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _alignmentList.size())) {\r
-            throw new IndexOutOfBoundsException("setAlignment: Index value '"+index+"' not in range [0.."+_alignmentList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         _alignmentList.setElementAt(vAlignment, index);\r
     } //-- void setAlignment(int, org.vamsas.objects.core.Alignment) \r
@@ -643,7 +642,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _dataSetAnnotationsList.size())) {\r
-            throw new IndexOutOfBoundsException("setDataSetAnnotations: Index value '"+index+"' not in range [0.."+_dataSetAnnotationsList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         _dataSetAnnotationsList.setElementAt(vDataSetAnnotations, index);\r
     } //-- void setDataSetAnnotations(int, org.vamsas.objects.core.DataSetAnnotations) \r
@@ -697,7 +696,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _sequenceList.size())) {\r
-            throw new IndexOutOfBoundsException("setSequence: Index value '"+index+"' not in range [0.."+_sequenceList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         _sequenceList.setElementAt(vSequence, index);\r
     } //-- void setSequence(int, org.vamsas.objects.core.Sequence) \r
@@ -731,7 +730,7 @@ public class DataSet implements java.io.Serializable {
     {\r
         //-- check bounds for index\r
         if ((index < 0) || (index > _treeList.size())) {\r
-            throw new IndexOutOfBoundsException("setTree: Index value '"+index+"' not in range [0.."+_treeList.size()+ "]");\r
+            throw new IndexOutOfBoundsException();\r
         }\r
         _treeList.setElementAt(vTree, index);\r
     } //-- void setTree(int, org.vamsas.objects.core.Tree) \r
@@ -758,13 +757,13 @@ public class DataSet implements java.io.Serializable {
      * \r
      * \r
      * @param reader\r
-     * @return DataSet\r
+     * @return Object\r
      */\r
-    public static org.vamsas.objects.core.DataSet unmarshal(java.io.Reader reader)\r
+    public static java.lang.Object unmarshal(java.io.Reader reader)\r
         throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
     {\r
         return (org.vamsas.objects.core.DataSet) Unmarshaller.unmarshal(org.vamsas.objects.core.DataSet.class, reader);\r
-    } //-- org.vamsas.objects.core.DataSet unmarshal(java.io.Reader) \r
+    } //-- java.lang.Object unmarshal(java.io.Reader) \r
 \r
     /**\r
      * Method validate\r