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Merge branch 'features/JAL-4071_visibleFeaturesCounter' into features/JAL-3417_sdppre...
[jalview.git] / src / uk / ac / ebi / www / picr / AccessionMappingService / AccessionMapperBindingStub.java
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
index d3e19d5..fa3fb80 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package uk.ac.ebi.www.picr.AccessionMappingService;
@@ -46,28 +48,33 @@ public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
     oper.addParameter(
             new javax.xml.namespace.QName(
                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
-                    "sequence"), new javax.xml.namespace.QName(
+                    "sequence"),
+            new javax.xml.namespace.QName(
                     "http://www.w3.org/2001/XMLSchema", "string"),
             java.lang.String.class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.addParameter(new javax.xml.namespace.QName(
-            "http://www.ebi.ac.uk/picr/AccessionMappingService",
-            "searchDatabases"), new javax.xml.namespace.QName(
-            "http://www.w3.org/2001/XMLSchema", "string"),
-            java.lang.String[].class,
-            org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.addParameter(
             new javax.xml.namespace.QName(
                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
-                    "taxonId"), new javax.xml.namespace.QName(
+                    "searchDatabases"),
+            new javax.xml.namespace.QName(
                     "http://www.w3.org/2001/XMLSchema", "string"),
-            java.lang.String.class,
+            java.lang.String[].class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.addParameter(new javax.xml.namespace.QName(
-            "http://www.ebi.ac.uk/picr/AccessionMappingService",
-            "onlyActive"), new javax.xml.namespace.QName(
-            "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
+            "http://www.ebi.ac.uk/picr/AccessionMappingService", "taxonId"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.addParameter(
+            new javax.xml.namespace.QName(
+                    "http://www.ebi.ac.uk/picr/AccessionMappingService",
+                    "onlyActive"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "boolean"),
+            boolean.class, org.apache.axis.description.ParameterDesc.IN,
+            false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
             "http://model.picr.ebi.ac.uk", "UPEntry"));
     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
@@ -80,36 +87,44 @@ public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
 
     oper = new org.apache.axis.description.OperationDesc();
     oper.setName("getUPIForAccession");
-    oper.addParameter(new javax.xml.namespace.QName(
-            "http://www.ebi.ac.uk/picr/AccessionMappingService",
-            "accession"), new javax.xml.namespace.QName(
-            "http://www.w3.org/2001/XMLSchema", "string"),
+    oper.addParameter(
+            new javax.xml.namespace.QName(
+                    "http://www.ebi.ac.uk/picr/AccessionMappingService",
+                    "accession"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
             java.lang.String.class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.addParameter(new javax.xml.namespace.QName(
-            "http://www.ebi.ac.uk/picr/AccessionMappingService",
-            "ac_version"), new javax.xml.namespace.QName(
-            "http://www.w3.org/2001/XMLSchema", "string"),
+    oper.addParameter(
+            new javax.xml.namespace.QName(
+                    "http://www.ebi.ac.uk/picr/AccessionMappingService",
+                    "ac_version"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
             java.lang.String.class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
-    oper.addParameter(new javax.xml.namespace.QName(
-            "http://www.ebi.ac.uk/picr/AccessionMappingService",
-            "searchDatabases"), new javax.xml.namespace.QName(
-            "http://www.w3.org/2001/XMLSchema", "string"),
-            java.lang.String[].class,
-            org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.addParameter(
             new javax.xml.namespace.QName(
                     "http://www.ebi.ac.uk/picr/AccessionMappingService",
-                    "taxonId"), new javax.xml.namespace.QName(
+                    "searchDatabases"),
+            new javax.xml.namespace.QName(
                     "http://www.w3.org/2001/XMLSchema", "string"),
-            java.lang.String.class,
+            java.lang.String[].class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
     oper.addParameter(new javax.xml.namespace.QName(
-            "http://www.ebi.ac.uk/picr/AccessionMappingService",
-            "onlyActive"), new javax.xml.namespace.QName(
-            "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
+            "http://www.ebi.ac.uk/picr/AccessionMappingService", "taxonId"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "string"),
+            java.lang.String.class,
             org.apache.axis.description.ParameterDesc.IN, false, false);
+    oper.addParameter(
+            new javax.xml.namespace.QName(
+                    "http://www.ebi.ac.uk/picr/AccessionMappingService",
+                    "onlyActive"),
+            new javax.xml.namespace.QName(
+                    "http://www.w3.org/2001/XMLSchema", "boolean"),
+            boolean.class, org.apache.axis.description.ParameterDesc.IN,
+            false, false);
     oper.setReturnType(new javax.xml.namespace.QName(
             "http://model.picr.ebi.ac.uk", "UPEntry"));
     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
@@ -274,7 +289,8 @@ public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
             Boolean.FALSE);
     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
             Boolean.FALSE);
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
     _call.setOperationName(new javax.xml.namespace.QName(
             "http://www.ebi.ac.uk/picr/AccessionMappingService",
             "getUPIForSequence"));
@@ -284,7 +300,7 @@ public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
     java.lang.Object _resp = _call
             .invoke(new java.lang.Object[]
             { sequence, searchDatabases, taxonId,
-                new java.lang.Boolean(onlyActive) });
+                java.lang.Boolean.valueOf(onlyActive) });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -322,16 +338,18 @@ public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
             Boolean.FALSE);
     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
             Boolean.FALSE);
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
     _call.setOperationName(new javax.xml.namespace.QName(
             "http://www.ebi.ac.uk/picr/AccessionMappingService",
             "getUPIForAccession"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    { accession, ac_version, searchDatabases, taxonId,
-        new java.lang.Boolean(onlyActive) });
+    java.lang.Object _resp = _call
+            .invoke(new java.lang.Object[]
+            { accession, ac_version, searchDatabases, taxonId,
+                java.lang.Boolean.valueOf(onlyActive) });
 
     if (_resp instanceof java.rmi.RemoteException)
     {
@@ -367,15 +385,15 @@ public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
             Boolean.FALSE);
     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
             Boolean.FALSE);
-    _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
+    _call.setSOAPVersion(
+            org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
     _call.setOperationName(new javax.xml.namespace.QName(
             "http://www.ebi.ac.uk/picr/AccessionMappingService",
             "getMappedDatabaseNames"));
 
     setRequestHeaders(_call);
     setAttachments(_call);
-    java.lang.Object _resp = _call.invoke(new java.lang.Object[]
-    {});
+    java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
 
     if (_resp instanceof java.rmi.RemoteException)
     {