public class PDBfileTest
{
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testIsRna()
{
SequenceI seq = new Sequence("Seq1", "CGAU");
*
* @throws IOException
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testParse() throws IOException
{
/*
*
* @throws IOException
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testParse_withAnnotations_noSS() throws IOException
{
PDBfile pf = new PDBfile(true, false, false, "examples/3W5V.pdb",
*
* @throws IOException
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testParse_withJmol_noAnnotations() throws IOException
{
PDBfile pf = new PDBfile(false, true, false, "examples/3W5V.pdb",
*
* @throws IOException
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testParse_withJmolAddAlignmentAnnotations()
throws IOException
{
* @throws IOException
*/
- @Test(groups =
- { "Functional" }, enabled = false)
+ @Test(groups = { "Functional" }, enabled = false)
public void testParse_withAnnotate3D() throws IOException
{
// TODO requires a mock for Annotate3D processing
PDBfile pf = new PDBfile(true, true, true, "examples/2GIS.pdb",
AppletFormatAdapter.FILE);
}
+
/**
* Helper method to extract parsed annotations from the PDBfile
*
pf.addAnnotations(al);
return al.getAlignmentAnnotation();
}
- }
+}