Merge branch 'develop' into trialMerge

[jalview.git] / test / jalview / analysis / AlignmentAnnotationUtilsTest.java

diff --git a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
index 610a60a..f41262c 100644 (file)
--- a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
+++ b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
@@ -29,7 +29,8 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
-import jalview.io.AppletFormatAdapter;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
 
 import java.io.IOException;
 import java.util.ArrayList;
@@ -152,7 +153,7 @@ public class AlignmentAnnotationUtilsTest
   public void setUp() throws IOException
   {
     alignment = new jalview.io.FormatAdapter().readFile(TEST_DATA,
-            AppletFormatAdapter.PASTE, "FASTA");
+            DataSourceType.PASTE, FileFormat.Fasta);
 
     AlignmentAnnotation[] anns = new AlignmentAnnotation[SEQ_ANN_COUNT];
     for (int i = 0; i < anns.length; i++)