/*
* sort with no score features does nothing
*/
- PA.setValue(AlignmentSorter.class, "lastSortByFeatureScore", null);
+ PA.setValue(AlignmentSorter.class, "sortByFeatureCriteria", null);
AlignmentSorter.sortByFeature(null, null, 0, al.getWidth(), al,
AlignmentSorter.FEATURE_SCORE);
/*
* sort by ascending score, no filter on feature type or group
- * NB sort order for the same feature set (none) is toggled so descending
+ * NB sort order for the same feature set (none) gets toggled, so descending
*/
- PA.setValue(AlignmentSorter.class, "sortByFeatureScoreAscending", true);
+ PA.setValue(AlignmentSorter.class, "sortByFeatureAscending", true);
AlignmentSorter.sortByFeature(null, null, 0, al.getWidth(), al,
AlignmentSorter.FEATURE_SCORE);
assertSame(al.getSequenceAt(3), seq3); // -0.5
* seq1 is now 2.0, seq3 is now -4
*/
// fails because seq1.findPosition(4) returns 4
- // although residue 4 is in column 5!
+ // although residue 4 is in column 5! - JAL-2544
AlignmentSorter.sortByFeature(null, null, 0, 4, al,
AlignmentSorter.FEATURE_SCORE);
assertSame(al.getSequenceAt(0), seq3); // -4