assertEquals(1, sf.getBegin());
assertEquals(1, sf.getEnd());
assertEquals("stop_gained", sf.getType());
- assertEquals("TAA", sf.getDescription());
+ assertEquals("Aaa/Taa", sf.getDescription());
assertEquals("var3", sf.getValue("ID"));
assertEquals("Bad", sf.getValue("clinical_significance"));
assertEquals("ID=var3;clinical_significance=Bad", sf.getAttributes());
assertEquals(1, sf.links.size());
assertEquals(
- "TAA var3|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var3",
+ "Aaa/Taa var3|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var3",
sf.links.get(0));
assertEquals(dbSnp, sf.getFeatureGroup());
assertEquals(1, sf.getBegin());
assertEquals(1, sf.getEnd());
assertEquals("synonymous_variant", sf.getType());
- assertEquals("AAG", sf.getDescription());
+ assertEquals("aaA/aaG", sf.getDescription());
assertEquals("var4", sf.getValue("ID"));
assertEquals("None", sf.getValue("clinical_significance"));
assertEquals("ID=var4;clinical_significance=None", sf.getAttributes());
assertEquals(1, sf.links.size());
assertEquals(
- "AAG var4|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var4",
+ "aaA/aaG var4|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var4",
sf.links.get(0));
assertEquals(cosmic, sf.getFeatureGroup());
assertEquals(2, sf.getBegin());
assertEquals(2, sf.getEnd());
assertEquals("synonymous_variant", sf.getType());
- assertEquals("TTC", sf.getDescription());
+ assertEquals("ttT/ttC", sf.getDescription());
assertEquals("var6", sf.getValue("ID"));
assertNull(sf.getValue("clinical_significance"));
assertEquals("ID=var6", sf.getAttributes());
assertEquals(1, sf.links.size());
assertEquals(
- "TTC var6|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var6",
+ "ttT/ttC var6|http://www.ensembl.org/Homo_sapiens/Variation/Summary?v=var6",
sf.links.get(0));
assertEquals(dbSnp, sf.getFeatureGroup());