JAL-1551 formatting

[jalview.git] / test / jalview / analysis / AnnotationSorterTest.java

diff --git a/test/jalview/analysis/AnnotationSorterTest.java b/test/jalview/analysis/AnnotationSorterTest.java
index 39b10fb..11c42ed 100644 (file)
--- a/test/jalview/analysis/AnnotationSorterTest.java
+++ b/test/jalview/analysis/AnnotationSorterTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.analysis;
 
 import static org.testng.AssertJUnit.assertEquals;
@@ -7,16 +27,26 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
 
 import java.util.ArrayList;
 import java.util.List;
 import java.util.Random;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
 public class AnnotationSorterTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   private static final int NUM_SEQS = 6;
 
   private static final int NUM_ANNS = 7;
@@ -261,9 +291,9 @@ public class AnnotationSorterTest
     testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
     long endTime = System.currentTimeMillis();
     final long elapsed = endTime - startTime;
-    System.out.println("Timing test for presorted " + numSeqs
-            + " sequences and " + numAnns + " annotations took " + elapsed
-            + "ms");
+    System.out.println(
+            "Timing test for presorted " + numSeqs + " sequences and "
+                    + numAnns + " annotations took " + elapsed + "ms");
   }
 
   /**
@@ -305,9 +335,9 @@ public class AnnotationSorterTest
     testee.sort(annotations, SequenceAnnotationOrder.SEQUENCE_AND_LABEL);
     long endTime = System.currentTimeMillis();
     final long elapsed = endTime - startTime;
-    System.out.println("Timing test for unsorted " + numSeqs
-            + " sequences and " + numAnns + " annotations took " + elapsed
-            + "ms");
+    System.out.println(
+            "Timing test for unsorted " + numSeqs + " sequences and "
+                    + numAnns + " annotations took " + elapsed + "ms");
   }
 
   /**
@@ -339,8 +369,8 @@ public class AnnotationSorterTest
     Alignment alignment = buildAlignment(numSeqs);
     AlignmentAnnotation[] annotations = buildAnnotations(numAnns);
 
-    String[] labels = new String[] { "label1", "label2", "label3",
-        "label4", "label5", "label6" };
+    String[] labels = new String[] { "label1", "label2", "label3", "label4",
+        "label5", "label6" };
 
     /*
      * Set the annotations in sequence order with randomly assigned labels.
@@ -358,9 +388,9 @@ public class AnnotationSorterTest
     testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
     long endTime = System.currentTimeMillis();
     long elapsed = endTime - startTime;
-    System.out.println("Sort by label for semisorted " + numSeqs
-            + " sequences and " + numAnns + " annotations took " + elapsed
-            + "ms");
+    System.out.println(
+            "Sort by label for semisorted " + numSeqs + " sequences and "
+                    + numAnns + " annotations took " + elapsed + "ms");
 
     // now resort by sequence
     startTime = System.currentTimeMillis();
@@ -376,8 +406,8 @@ public class AnnotationSorterTest
     testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
     endTime = System.currentTimeMillis();
     elapsed = endTime - startTime;
-    System.out.println("Resort by label for semisorted " + numSeqs
-            + " sequences and " + numAnns + " annotations took " + elapsed
-            + "ms");
+    System.out.println(
+            "Resort by label for semisorted " + numSeqs + " sequences and "
+                    + numAnns + " annotations took " + elapsed + "ms");
   }
 }