testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
long endTime = System.currentTimeMillis();
final long elapsed = endTime - startTime;
- System.out.println("Timing test for presorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Timing test for presorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
}
/**
testee.sort(annotations, SequenceAnnotationOrder.SEQUENCE_AND_LABEL);
long endTime = System.currentTimeMillis();
final long elapsed = endTime - startTime;
- System.out.println("Timing test for unsorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Timing test for unsorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
}
/**
Alignment alignment = buildAlignment(numSeqs);
AlignmentAnnotation[] annotations = buildAnnotations(numAnns);
- String[] labels = new String[] { "label1", "label2", "label3",
- "label4", "label5", "label6" };
+ String[] labels = new String[] { "label1", "label2", "label3", "label4",
+ "label5", "label6" };
/*
* Set the annotations in sequence order with randomly assigned labels.
testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
long endTime = System.currentTimeMillis();
long elapsed = endTime - startTime;
- System.out.println("Sort by label for semisorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Sort by label for semisorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
// now resort by sequence
startTime = System.currentTimeMillis();
testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
endTime = System.currentTimeMillis();
elapsed = endTime - startTime;
- System.out.println("Resort by label for semisorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Resort by label for semisorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
}
}