+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.analysis;
import static org.testng.AssertJUnit.assertEquals;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
import java.util.ArrayList;
import java.util.List;
import java.util.Random;
+import org.testng.annotations.BeforeClass;
import org.testng.annotations.BeforeMethod;
import org.testng.annotations.Test;
public class AnnotationSorterTest
{
+
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
private static final int NUM_SEQS = 6;
private static final int NUM_ANNS = 7;
testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
long endTime = System.currentTimeMillis();
final long elapsed = endTime - startTime;
- System.out.println("Timing test for presorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Timing test for presorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
}
/**
testee.sort(annotations, SequenceAnnotationOrder.SEQUENCE_AND_LABEL);
long endTime = System.currentTimeMillis();
final long elapsed = endTime - startTime;
- System.out.println("Timing test for unsorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Timing test for unsorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
}
/**
Alignment alignment = buildAlignment(numSeqs);
AlignmentAnnotation[] annotations = buildAnnotations(numAnns);
- String[] labels = new String[] { "label1", "label2", "label3",
- "label4", "label5", "label6" };
+ String[] labels = new String[] { "label1", "label2", "label3", "label4",
+ "label5", "label6" };
/*
* Set the annotations in sequence order with randomly assigned labels.
testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
long endTime = System.currentTimeMillis();
long elapsed = endTime - startTime;
- System.out.println("Sort by label for semisorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Sort by label for semisorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
// now resort by sequence
startTime = System.currentTimeMillis();
testee.sort(annotations, SequenceAnnotationOrder.LABEL_AND_SEQUENCE);
endTime = System.currentTimeMillis();
elapsed = endTime - startTime;
- System.out.println("Resort by label for semisorted " + numSeqs
- + " sequences and " + numAnns + " annotations took " + elapsed
- + "ms");
+ System.out.println(
+ "Resort by label for semisorted " + numSeqs + " sequences and "
+ + numAnns + " annotations took " + elapsed + "ms");
}
}