public class CodingUtilsTest
{
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testDecodeCodon()
{
- assertTrue(Arrays.equals(new char[]
- { 'A', 'A', 'A' }, CodingUtils.decodeCodon(0)));
- assertTrue(Arrays.equals(new char[]
- { 'A', 'A', 'C' }, CodingUtils.decodeCodon(1)));
- assertTrue(Arrays.equals(new char[]
- { 'A', 'A', 'G' }, CodingUtils.decodeCodon(2)));
- assertTrue(Arrays.equals(new char[]
- { 'A', 'A', 'T' }, CodingUtils.decodeCodon(3)));
- assertTrue(Arrays.equals(new char[]
- { 'A', 'C', 'A' }, CodingUtils.decodeCodon(4)));
- assertTrue(Arrays.equals(new char[]
- { 'C', 'A', 'A' }, CodingUtils.decodeCodon(16)));
- assertTrue(Arrays.equals(new char[]
- { 'G', 'G', 'G' }, CodingUtils.decodeCodon(42)));
- assertTrue(Arrays.equals(new char[]
- { 'T', 'T', 'T' }, CodingUtils.decodeCodon(63)));
+ assertTrue(Arrays.equals(new char[] { 'A', 'A', 'A' },
+ CodingUtils.decodeCodon(0)));
+ assertTrue(Arrays.equals(new char[] { 'A', 'A', 'C' },
+ CodingUtils.decodeCodon(1)));
+ assertTrue(Arrays.equals(new char[] { 'A', 'A', 'G' },
+ CodingUtils.decodeCodon(2)));
+ assertTrue(Arrays.equals(new char[] { 'A', 'A', 'T' },
+ CodingUtils.decodeCodon(3)));
+ assertTrue(Arrays.equals(new char[] { 'A', 'C', 'A' },
+ CodingUtils.decodeCodon(4)));
+ assertTrue(Arrays.equals(new char[] { 'C', 'A', 'A' },
+ CodingUtils.decodeCodon(16)));
+ assertTrue(Arrays.equals(new char[] { 'G', 'G', 'G' },
+ CodingUtils.decodeCodon(42)));
+ assertTrue(Arrays.equals(new char[] { 'T', 'T', 'T' },
+ CodingUtils.decodeCodon(63)));
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testDecodeNucleotide()
{
assertEquals('A', CodingUtils.decodeNucleotide(0));
assertEquals('0', CodingUtils.decodeNucleotide(4));
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testEncodeCodon()
{
assertTrue(CodingUtils.encodeCodon('Z') < 0);
assertEquals(3, CodingUtils.encodeCodon('T'));
assertEquals(3, CodingUtils.encodeCodon('u'));
assertEquals(3, CodingUtils.encodeCodon('U'));
-
+
assertEquals(-1, CodingUtils.encodeCodon(null));
- assertEquals(0, CodingUtils.encodeCodon(new char[]
- { 'A', 'A', 'A' }));
- assertEquals(1, CodingUtils.encodeCodon(new char[]
- { 'A', 'A', 'C' }));
- assertEquals(2, CodingUtils.encodeCodon(new char[]
- { 'A', 'A', 'G' }));
- assertEquals(3, CodingUtils.encodeCodon(new char[]
- { 'A', 'A', 'T' }));
- assertEquals(4, CodingUtils.encodeCodon(new char[]
- { 'A', 'C', 'A' }));
- assertEquals(16, CodingUtils.encodeCodon(new char[]
- { 'C', 'A', 'A' }));
- assertEquals(42, CodingUtils.encodeCodon(new char[]
- { 'G', 'G', 'G' }));
- assertEquals(63, CodingUtils.encodeCodon(new char[]
- { 'T', 'T', 'T' }));
+ assertEquals(0, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'A' }));
+ assertEquals(1, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'C' }));
+ assertEquals(2, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'G' }));
+ assertEquals(3, CodingUtils.encodeCodon(new char[] { 'A', 'A', 'T' }));
+ assertEquals(4, CodingUtils.encodeCodon(new char[] { 'A', 'C', 'A' }));
+ assertEquals(16, CodingUtils.encodeCodon(new char[] { 'C', 'A', 'A' }));
+ assertEquals(42, CodingUtils.encodeCodon(new char[] { 'G', 'G', 'G' }));
+ assertEquals(63, CodingUtils.encodeCodon(new char[] { 'T', 'T', 'T' }));
}
}