import static org.testng.AssertJUnit.assertTrue;
import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
+import jalview.datamodel.SequenceMapping;
import jalview.gui.JvOptionPane;
import jalview.util.DBRefUtils;
import jalview.util.MapList;
assertEquals(1, result.size());
assertSame(dna1, result.get(0));
// should now have a mapping from dna to pep1
- List<SequenceToSequenceMapping> mappings = acf.getMappings();
+ List<SequenceMapping> mappings = acf.getMappings();
assertEquals(1, mappings.size());
- SequenceToSequenceMapping mapping = mappings.get(0);
+ SequenceMapping mapping = mappings.get(0);
assertSame(dna1, mapping.getFromSeq());
assertSame(pep1, mapping.getMapping().getTo());
MapList mapList = mapping.getMapping().getMap();