JAL-3759 fix compilation error for test

[jalview.git] / test / jalview / analysis / SequenceIdMatcherTest.java

diff --git a/test/jalview/analysis/SequenceIdMatcherTest.java b/test/jalview/analysis/SequenceIdMatcherTest.java
index eb0fc47..bbed9d3 100644 (file)
--- a/test/jalview/analysis/SequenceIdMatcherTest.java
+++ b/test/jalview/analysis/SequenceIdMatcherTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.analysis;
 
 import static org.testng.AssertJUnit.assertFalse;
@@ -5,12 +25,22 @@ import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.analysis.SequenceIdMatcher.SeqIdName;
 import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class SequenceIdMatcherTest
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
+
   /**
    * Test the method that checks for one sequence id starting with the other,
    * followed by an 'allowed' separator character
@@ -50,6 +80,10 @@ public class SequenceIdMatcherTest
     assertTrue(testee.equals("A12345,"));
     assertTrue(testee.equals("A12345?"));
     assertTrue(testee.equals("A12345_"));
+    /*
+     * case insensitive matching
+     */
+    assertTrue(testee.equals("a12345"));
 
     /*
      * matcher name = target name + word separator...
@@ -58,13 +92,21 @@ public class SequenceIdMatcherTest
     assertTrue(testee.equals("A12345"));
 
     /*
+     * case insensitive matching
+     */
+    assertTrue(testee.equals("a12345"));
+
+    /*
      * miscellaneous failing cases
      */
     testee = sequenceIdMatcher.new SeqIdName("A12345");
     assertFalse(testee.equals((Object) null));
     assertFalse(testee.equals(""));
-    assertFalse(testee.equals("a12345"));
     assertFalse(testee.equals("A12346|A12345"));
+    /*
+     * case insensitive matching
+     */
+    assertTrue(testee.equals("a12345"));
 
     testee = sequenceIdMatcher.new SeqIdName("A12345?B23456");
     assertFalse(testee.equals("B23456"));
@@ -74,5 +116,15 @@ public class SequenceIdMatcherTest
     testee = sequenceIdMatcher.new SeqIdName("A12345<");
     assertFalse(testee.equals("A12345?"));
     assertTrue(testee.equals("A12345<")); // bug? inconsistent
+    /*
+     * case insensitive matching
+     */
+    assertTrue(testee.equals("a12345"));
+
+    testee = sequenceIdMatcher.new SeqIdName("UNIPROT|A12345");
+    assertFalse(testee.equals("A12345"));
+    assertFalse(testee.equals("UNIPROT|B98765"));
+    assertFalse(testee.equals("UNIPROT|"));
+    assertTrue(testee.equals("UNIPROT"));
   }
 }