import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNull;
-import org.testng.annotations.Test;
-import org.testng.annotations.BeforeMethod;
-import java.io.PrintStream;
import jalview.datamodel.Mapping;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
+import java.io.PrintStream;
+
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
+
/**
* Test the alignment -> Mapping routines
*
}
- @Test
+ @Test(groups ={ "Functional" })
/**
* simple test that mapping from alignment corresponds identical positions.
*/
}
}
- @Test
+ @Test(groups ={ "Functional" })
public void testExtractGaps()
{
assertNull(AlignSeq.extractGaps(null, null));
assertEquals("ABCD", AlignSeq.extractGaps(" .-", ". -A-B.C D."));
}
- @Test
+ @Test(groups ={ "Functional" })
public void testPrintAlignment()
{
AlignSeq as = AlignSeq.doGlobalNWAlignment(s1, s3, AlignSeq.PEP);