{
AlignFrame alf = getTestAlignmentFrame();
FeatureScoreModel fsm = new FeatureScoreModel();
- Assert.assertTrue(fsm.configureFromAlignmentView(alf
- .getCurrentView().getAlignPanel()));
+ Assert.assertTrue(fsm.configureFromAlignmentView(alf.getCurrentView()
+ .getAlignPanel()));
alf.selectAllSequenceMenuItem_actionPerformed(null);
float[][] dm = fsm.findDistances(alf.getViewport().getAlignmentView(
true));
alf.selectAllSequenceMenuItem_actionPerformed(null);
float[][] dm = fsm.findDistances(alf.getViewport().getAlignmentView(
true));
- Assert.assertTrue(dm[0][2] == 0f,
+ Assert.assertTrue(
+ dm[0][2] == 0f,
"After hiding last two columns FER1_MESCR (0) should still be identical with RAPSA (2)");
- Assert.assertTrue(dm[0][1] == 0f,
+ Assert.assertTrue(
+ dm[0][1] == 0f,
"After hiding last two columns FER1_MESCR (0) should now also be identical with SPIOL (1)");
- for (int s=0;s<3;s++)
+ for (int s = 0; s < 3; s++)
{
Assert.assertTrue(dm[s][3] > 0f, "After hiding last two columns "
+ alf.getViewport().getAlignment().getSequenceAt(s).getName()