import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
import jalview.io.FileLoader;
-import jalview.io.FormatAdapter;
import java.util.Arrays;
public AlignFrame getTestAlignmentFrame()
{
AlignFrame alf = new FileLoader(false).LoadFileWaitTillLoaded(
- alntestFile, FormatAdapter.PASTE);
+ alntestFile, DataSourceType.PASTE);
AlignmentI al = alf.getViewport().getAlignment();
Assert.assertEquals(al.getHeight(), 4);
Assert.assertEquals(al.getWidth(), 5);
String alignment = "a CCCCCCGGGGGGCCCCCC\n" + "b CCCCCCGGGGGGCCCCCC\n"
+ "c CCCCCCGGGGGGCCCCCC\n";
AlignFrame af = new jalview.io.FileLoader(false)
- .LoadFileWaitTillLoaded(alignment, FormatAdapter.PASTE);
+ .LoadFileWaitTillLoaded(alignment, DataSourceType.PASTE);
SequenceI aseq = af.getViewport().getAlignment().getSequenceAt(0);
SequenceFeature sf = null;
sf = new SequenceFeature("disulphide bond", "", 2, 5, Float.NaN, "");