JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and

[jalview.git] / test / jalview / analysis / scoremodels / ScoreMatrixTest.java

diff --git a/test/jalview/analysis/scoremodels/ScoreMatrixTest.java b/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
index ae5ad5d..1076d43 100644 (file)
--- a/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
+++ b/test/jalview/analysis/scoremodels/ScoreMatrixTest.java
@@ -171,7 +171,7 @@ public class ScoreMatrixTest
     String[] seqs = new String[] { "FKL", "R D", "QIA", "GWC" };
     ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
 
-    MatrixI pairwise = sm.computePairwiseScores(seqs);
+    MatrixI pairwise = sm.findSimilarities(seqs, SimilarityParams.Jalview);
 
     /*
      * should be NxN where N = number of sequences
@@ -236,7 +236,7 @@ public class ScoreMatrixTest
   }
 
   @Test(groups = "Functional")
-  public void testEauals()
+  public void testEqualsAndHashCode()
   {
     ScoreMatrix sm = ScoreModels.getInstance().getBlosum62();
     ScoreMatrix sm2 = new ScoreMatrix(sm.getName(), sm.getSymbols()