+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.analysis.scoremodels;
import static org.testng.Assert.assertEquals;
String[] seqs2 = new String[] { seq2, seq1 };
MatrixI res2 = sm.findSimilarities(seqs2, params);
assertFalse(res1.equals(res2));
- assertTrue(res2.equals(new Matrix(new double[][]
+ assertTrue(
+ res2.equals(new Matrix(new double[][]
{ { 16d, 3d }, { 3d, 14d } }), delta));
/*
sm = new ScoreMatrix("Test", "AB".toCharArray(), scores);
assertFalse(sm.isSymmetric()); // [0, 1] != [1, 0]
res1 = sm.findSimilarities(seqs1, params);
- assertTrue(res1.equals(new Matrix(new double[][]
+ assertTrue(
+ res1.equals(new Matrix(new double[][]
{ { 14d, 7d }, { 11d, 16d } }), delta));
/*