{
BufferedReader outputReader = new BufferedReader(
new InputStreamReader(ls2_proc.getInputStream()));
-
BufferedReader errorReader = new BufferedReader(
new InputStreamReader(ls2_proc.getErrorStream()));
worker = new Worker(ls2_proc);
return worker;
}
- @BeforeTest
+ @BeforeTest(alwaysRun = true)
public void initialize()
{
new CommandLineOperations();
}
-
- @BeforeTest
+ @BeforeTest(alwaysRun = true)
public void setUpForHeadlessCommandLineInputOperations()
throws IOException
{
String cmds = "nodisplay -open examples/uniref50.fa -sortbytree -props FILE -colour zappo "
+ "-jabaws http://www.compbio.dundee.ac.uk/jabaws -nosortbytree -dasserver nickname=www.test.com "
- + "-features uniref50_test_features -annotations uniref50_test_annot -tree uniref50_test_tree";
+ + "-features examples/testdata/plantfdx.features -annotations examples/testdata/plantfdx.annotations -tree examples/testdata/uniref50_test_tree";
Worker worker = jalviewDesktopRunner(true, cmds, 9000);
String ln = null;
while ((ln = worker.getOutputReader().readLine()) != null)
}
}
- @BeforeTest
+ @BeforeTest(alwaysRun = true)
public void setUpForCommandLineInputOperations() throws IOException
{
String cmds = "-open examples/uniref50.fa -noquestionnaire -nousagestats";
"Failed command : -nosortbytree" },
{ "CMD [-dasserver nickname=www.test.com] executed successfully!",
"Failed command : -dasserver nickname=www.test.com" },
- { "CMD [-features uniref50_test_features] executed successfully!",
- "Failed command : -features uniref50_test_features" },
- { "CMD [-annotations uniref50_test_annot] executed successfully!",
- "Failed command : -annotations uniref50_test_annot" },
- { "CMD [-tree uniref50_test_tree] executed successfully!",
- "Failed command : -tree uniref50_test_tree" },
+ {
+ "CMD [-features examples/testdata/plantfdx.features] executed successfully!",
+ "Failed command : -features examples/testdata/plantfdx.features" },
+ {
+ "CMD [-annotations examples/testdata/plantfdx.annotations] executed successfully!",
+ "Failed command : -annotations examples/testdata/plantfdx.annotations" },
+ {
+ "CMD [-tree examples/testdata/uniref50_test_tree] executed successfully!",
+ "Failed command : -tree examples/testdata/uniref50_test_tree" },
// non headless mode input operations
{ "CMD [-nousagestats] executed successfully!",
"Failed command : -nousagestats" },