JAL-629 Change --open to --append and --opennew to --open. Make --open(new) part...

[jalview.git] / test / jalview / bin / CommandsTest2.java

diff --git a/test/jalview/bin/CommandsTest2.java b/test/jalview/bin/CommandsTest2.java
index 71452e2..ca0d3e4 100644 (file)
--- a/test/jalview/bin/CommandsTest2.java
+++ b/test/jalview/bin/CommandsTest2.java
@@ -125,40 +125,44 @@ public class CommandsTest2
       int viewerNum,
       String propsFile
      */
-    return new Object[][] { { "--nonews --nosplash --debug "
-            + "--open=examples/uniref50.fa " + "--colour=gecos:flower "
-            + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
-            + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "
-            + "--props=test/jalview/bin/commandsTest2.jvprops1 ",
-        15, 7, 1 },
-        { "--nonews --nosplash --debug " + "--open=examples/uniref50.fa "
+    return new Object[][] {
+        //
+        /*
+         */
+        { "--nonews --nosplash --debug " + "--append=examples/uniref50.fa "
+                + "--colour=gecos:flower "
+                + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
+                + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "
+                + "--props=test/jalview/bin/commandsTest2.jvprops1 ",
+            15, 7, 1 },
+        { "--nonews --nosplash --debug " + "--append=examples/uniref50.fa "
                 + "--colour=gecos:flower "
                 + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
                 + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "
                 + "--props=test/jalview/bin/commandsTest2.jvprops2 ",
             15, 4, 1 },
-        { "--nonews --nosplash --debug " + "--open=examples/uniref50.fa "
+        { "--nonews --nosplash --debug " + "--append=examples/uniref50.fa "
                 + "--colour=gecos:flower "
                 + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
                 + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "
                 + "--nossannotations "
                 + "--props=test/jalview/bin/commandsTest2.jvprops1 ",
             15, 4, 1 },
-        { "--nonews --nosplash --debug " + "--open=examples/uniref50.fa "
+        { "--nonews --nosplash --debug " + "--append=examples/uniref50.fa "
                 + "--colour=gecos:flower "
                 + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
                 + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "
                 + "--noannotations "
                 + "--props=test/jalview/bin/commandsTest2.jvprops1 ",
             15, 3, 1 },
-        { "--nonews --nosplash --debug " + "--open=examples/uniref50.fa "
+        { "--nonews --nosplash --debug " + "--append=examples/uniref50.fa "
                 + "--colour=gecos:flower "
                 + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
                 + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "
                 + "--noannotations " + "--nossannotations "
                 + "--props=test/jalview/bin/commandsTest2.jvprops1 ",
             15, 0, 1 },
-        { "--nonews --nosplash --debug " + "--open=examples/uniref50.fa "
+        { "--nonews --nosplash --debug " + "--append=examples/uniref50.fa "
                 + "--colour=gecos:flower "
                 + "--structure=[seqid=FER1_SPIOL]examples/AlphaFold/AF-P00221-F1-model_v4.cif "
                 + "--paematrix=examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json "