JAL-4308 reduce number of refs to 5, always have canonical reference first.

[jalview.git] / test / jalview / bin / commandsTest2.argfile2

diff --git a/test/jalview/bin/commandsTest2.argfile2 b/test/jalview/bin/commandsTest2.argfile2
index d057858..1afc69c 100644 (file)
--- a/test/jalview/bin/commandsTest2.argfile2
+++ b/test/jalview/bin/commandsTest2.argfile2
@@ -2,11 +2,11 @@
 --nonews
 --nosplash
 --substitutions
---open=examples/test_fab41.result/sample.a2m
---noannotations
---nossannotations
---colour=gecos:flower
---structure=[tempfac=plddt;paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--append=examples/test_fab41.result/sample.a2m
+--noshowannotations
+--noshowssannotations
+--colour=gecos-flower
+--structure=[tempfac=plddt,paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
 --structureviewer=none
 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
 --structureviewer=jmol
@@ -16,7 +16,7 @@
 --structureviewer=jmol
 --paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
 --tempfac=plddt
---structure=[viewer=none]{dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
+--structure=[structureviewer=none]{dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
 --paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
 --tempfac=plddt
 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb