import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.gui.JvOptionPane;
+import jalview.io.DataSourceType;
import jalview.io.FileLoader;
-import jalview.io.FormatAdapter;
import java.util.Arrays;
import java.util.BitSet;
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
"seq1 aMMMaaaaaaaaaaaaaaaa\n" + "seq2 aaaMMMMMMMaaaaaaaaaa\n"
+ "seq3 aaaaaaaaaaMMMMMaaaaa\n"
- + "seq4 aaaaaaaaaaaaaaaaaaaa\n", FormatAdapter.PASTE);
+ + "seq4 aaaaaaaaaaaaaaaaaaaa\n", DataSourceType.PASTE);
SearchResultsI sr = new SearchResults();
SequenceI[] sqs = af.getViewport().getAlignment().getSequencesArray();