import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertTrue;
+import java.awt.Color;
+import java.util.Arrays;
+import java.util.BitSet;
+
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
import jalview.analysis.Finder;
import jalview.api.AlignViewControllerI;
import jalview.api.FeatureColourI;
import jalview.io.FileLoader;
import jalview.schemes.FeatureColour;
-import java.awt.Color;
-import java.util.Arrays;
-import java.util.BitSet;
-
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
-
public class AlignViewControllerTest
{
* test Match/Find works first
*/
FinderI f = new Finder(af.getViewport());
- f.findAll("M+", true, false, false);
+ f.findAll("M+", true, false, false, false);
assertEquals(
"Finder found different set of results to manually created SearchResults",
sr, f.getSearchResults());