import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertFalse;
-import org.testng.annotations.Test;
-import org.testng.Assert;
+
import jalview.util.MapList;
import java.util.Iterator;
+import org.testng.Assert;
+import org.testng.annotations.Test;
+
/**
* Unit tests for Mapping$AlignedCodonIterator
*
/**
* Test normal case for iterating over aligned codons.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testNext()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCtAG-AtG-Gc");
/**
* Test weird case where the mapping skips over a peptide.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testNext_unmappedPeptide()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCtAG-AtG-Gc");
/**
* Test for exception thrown for an incomplete codon.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testNext_incompleteCodon()
{
SequenceI from = new Sequence("Seq1", "-CgC-C-cCgTt");
/**
* Test normal case for iterating over aligned codons.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testAnother()
{
SequenceI from = new Sequence("Seq1", "TGCCATTACCAG-");