Merge branch 'develop' into trialMerge

[jalview.git] / test / jalview / datamodel / AlignmentAnnotationTests.java

diff --git a/test/jalview/datamodel/AlignmentAnnotationTests.java b/test/jalview/datamodel/AlignmentAnnotationTests.java
index dc86f78..a2c6256 100644 (file)
--- a/test/jalview/datamodel/AlignmentAnnotationTests.java
+++ b/test/jalview/datamodel/AlignmentAnnotationTests.java
@@ -26,6 +26,7 @@ import static org.testng.AssertJUnit.assertNull;
 import jalview.analysis.AlignSeq;
 import jalview.gui.JvOptionPane;
 import jalview.io.AppletFormatAdapter;
+import jalview.io.FileFormat;
 
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -129,7 +130,8 @@ public class AlignmentAnnotationTests
     alSeq2.setEnd(sqTo.getStart() + align.getSeq2End() - 1);
     alSeq2.setDatasetSequence(sqTo);
     System.out.println(new AppletFormatAdapter()
-            .formatSequences("STH", new Alignment(new SequenceI[] { sqFrom,
+.formatSequences(
+            FileFormat.Stockholm, new Alignment(new SequenceI[] { sqFrom,
                 alSeq1, sqTo, alSeq2 }), true));
 
     Mapping mp = align.getMappingFromS1(false);
@@ -153,7 +155,8 @@ public class AlignmentAnnotationTests
     AlignmentI all = new Alignment(new SequenceI[] { alSeq1, alSeq2 });
     all.addAnnotation(almap1);
     all.addAnnotation(almap2);
-    System.out.println(new AppletFormatAdapter().formatSequences("STH",
+    System.out.println(new AppletFormatAdapter().formatSequences(
+            FileFormat.Stockholm,
             all, true));
 
     for (int p = 0; p < alSeq1.getLength(); p++)
@@ -290,4 +293,4 @@ public class AlignmentAnnotationTests
               ann.getDefaultRnaHelixSymbol(i));
     }
   }
-}
\ No newline at end of file
+}