/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
import static org.testng.AssertJUnit.assertNull;
import jalview.analysis.AlignSeq;
+import jalview.gui.JvOptionPane;
import jalview.io.AppletFormatAdapter;
+import jalview.io.FileFormat;
+import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
public class AlignmentAnnotationTests
{
+
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
@Test(groups = { "Functional" })
public void testCopyConstructor()
{
alSeq2.setEnd(sqTo.getStart() + align.getSeq2End() - 1);
alSeq2.setDatasetSequence(sqTo);
System.out.println(new AppletFormatAdapter()
- .formatSequences("STH", new Alignment(new SequenceI[] { sqFrom,
+.formatSequences(
+ FileFormat.Stockholm, new Alignment(new SequenceI[] { sqFrom,
alSeq1, sqTo, alSeq2 }), true));
Mapping mp = align.getMappingFromS1(false);
AlignmentI all = new Alignment(new SequenceI[] { alSeq1, alSeq2 });
all.addAnnotation(almap1);
all.addAnnotation(almap2);
- System.out.println(new AppletFormatAdapter().formatSequences("STH",
+ System.out.println(new AppletFormatAdapter().formatSequences(
+ FileFormat.Stockholm,
all, true));
for (int p = 0; p < alSeq1.getLength(); p++)
ann.getDefaultRnaHelixSymbol(i));
}
}
-}
\ No newline at end of file
+}