JAL-2843 read/write feature filters from/to Jalview features file

[jalview.git] / test / jalview / datamodel / AlignmentAnnotationTests.java

diff --git a/test/jalview/datamodel/AlignmentAnnotationTests.java b/test/jalview/datamodel/AlignmentAnnotationTests.java
index fb02166..e47e9d6 100644 (file)
--- a/test/jalview/datamodel/AlignmentAnnotationTests.java
+++ b/test/jalview/datamodel/AlignmentAnnotationTests.java
@@ -24,13 +24,24 @@ import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertNull;
 
 import jalview.analysis.AlignSeq;
+import jalview.gui.JvOptionPane;
 import jalview.io.AppletFormatAdapter;
 import jalview.io.FileFormat;
 
+import org.testng.Assert;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class AlignmentAnnotationTests
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = { "Functional" })
   public void testCopyConstructor()
   {
@@ -283,4 +294,45 @@ public class AlignmentAnnotationTests
               ann.getDefaultRnaHelixSymbol(i));
     }
   }
+
+  public static Annotation newAnnotation(String ann)
+  {
+    float val = 0f;
+    try
+    {
+      val = Float.parseFloat(ann);
+    } catch (NumberFormatException q)
+    {
+    }
+    ;
+    return new Annotation(ann, ann, '\0', val);
+  }
+
+  @Test(groups = { "Functional" })
+  public void testIsQuantitative()
+  {
+    AlignmentAnnotation ann = null;
+
+    ann = new AlignmentAnnotation("an", "some an", null);
+    Assert.assertFalse(ann.isQuantitative(),
+            "Empty annotation set should not be quantitative.");
+
+    ann = new AlignmentAnnotation("an", "some an", new Annotation[] {
+        newAnnotation("4"), newAnnotation("1"), newAnnotation("1"),
+        newAnnotation("0.1"), newAnnotation("0.3") });
+    Assert.assertTrue(ann.isQuantitative(),
+            "All numbers annotation set should be quantitative.");
+
+    ann = new AlignmentAnnotation("an", "some an", new Annotation[] {
+        newAnnotation("E"), newAnnotation("E"), newAnnotation("E"),
+        newAnnotation("E"), newAnnotation("E") });
+    Assert.assertFalse(ann.isQuantitative(),
+            "All 'E' annotation set should not be quantitative.");
+
+    ann = new AlignmentAnnotation("an", "some an", new Annotation[] {
+        newAnnotation("E"), newAnnotation("1"), newAnnotation("2"),
+        newAnnotation("3"), newAnnotation("E") });
+    Assert.assertTrue(ann.isQuantitative(),
+            "Mixed 'E' annotation set should be quantitative.");
+  }
 }