createAnnotation(sq);
AlignmentAnnotation alc, alo = sq.getAnnotation()[0];
alc = new AlignmentAnnotation(alo);
+
+ // TODO: this only tests string equals (which is unreliable), should use
+ // refactored tests from StockholmFileTest
+ Assert.assertEquals(alc.toString(), alo.toString());
+
for (String key : alo.getProperties())
{
assertEquals("Property mismatch", alo.getProperty(key),