JAL-2110 copy alcodonframes only if copy constructor called on dataset alignmentI...

[jalview.git] / test / jalview / datamodel / AlignmentTest.java

diff --git a/test/jalview/datamodel/AlignmentTest.java b/test/jalview/datamodel/AlignmentTest.java
index 5a45176..08a9441 100644 (file)
--- a/test/jalview/datamodel/AlignmentTest.java
+++ b/test/jalview/datamodel/AlignmentTest.java
@@ -398,6 +398,8 @@ public class AlignmentTest
     // TODO should the copy constructor copy the dataset?
     // or make a new one referring to the same dataset sequences??
     assertNull(copy.getDataset());
+    // TODO test metadata is copied when AlignmentI is a dataset
+
     // assertArrayEquals(copy.getDataset().getSequencesArray(), protein
     // .getDataset().getSequencesArray());
   }
@@ -436,8 +438,7 @@ public class AlignmentTest
     // TODO promote this method to AlignmentI
     ((Alignment) protein).createDatasetAlignment();
 
-    // TODO this method should return AlignmentI not Alignment !!
-    Alignment ds = protein.getDataset();
+    AlignmentI ds = protein.getDataset();
 
     // side-effect: dataset created on second sequence
     assertNotNull(protein.getSequenceAt(1).getDatasetSequence());