JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property to 'PDB_DOWNLOAD_FORMAT'

[jalview.git] / test / jalview / datamodel / AlignmentTest.java

diff --git a/test/jalview/datamodel/AlignmentTest.java b/test/jalview/datamodel/AlignmentTest.java
index 08a9441..b75ef50 100644 (file)
--- a/test/jalview/datamodel/AlignmentTest.java
+++ b/test/jalview/datamodel/AlignmentTest.java
@@ -217,7 +217,7 @@ public class AlignmentTest
    * 
    * @throws IOException
    */
-  @Test(groups = { "Functional" }, enabled = false)
+  @Test(groups = { "Functional" }, enabled = true)
   // TODO review / update this test after redesign of alignAs method
   public void testAlignAs_cdnaAsProtein() throws IOException
   {
@@ -232,7 +232,7 @@ public class AlignmentTest
      * Realign DNA; currently keeping existing gaps in introns only
      */
     ((Alignment) al1).alignAs(al2, false, true);
-    assertEquals("ACG---GCUCCA------ACT", al1.getSequenceAt(0)
+    assertEquals("ACG---GCUCCA------ACT---", al1.getSequenceAt(0)
             .getSequenceAsString());
     assertEquals("---CGT---TAACGA---AGT---", al1.getSequenceAt(1)
             .getSequenceAsString());
@@ -243,7 +243,7 @@ public class AlignmentTest
    * 
    * @throws IOException
    */
-  @Test(groups = { "Functional" }, enabled = false)
+  @Test(groups = { "Functional" }, enabled = true)
   // TODO review / update this test after redesign of alignAs method
   public void testAlignAs_cdnaAsProtein_singleSequence() throws IOException
   {
@@ -315,7 +315,12 @@ public class AlignmentTest
       acf.addMap(seqFrom, seqTo, ml);
     }
 
+    /*
+     * not sure whether mappings 'belong' or protein or nucleotide
+     * alignment, so adding to both ;~)
+     */
     alFrom.addCodonFrame(acf);
+    alTo.addCodonFrame(acf);
   }
 
   /**