Merge branch 'Jalview-JS/jim/JAL-3253-JAL-3418' into Jalview-JS/JAL-3253-applet

[jalview.git] / test / jalview / datamodel / CigarArrayTest.java

diff --git a/test/jalview/datamodel/CigarArrayTest.java b/test/jalview/datamodel/CigarArrayTest.java
index 20dcc96..7bee423 100644 (file)
--- a/test/jalview/datamodel/CigarArrayTest.java
+++ b/test/jalview/datamodel/CigarArrayTest.java
@@ -68,8 +68,13 @@ public class CigarArrayTest
     // we are comparing a sequence to its own subsequence (the group) + hidden
     // columns.
 
-    CigarArray cig = new CigarArray(al, hc, sg1);
+    // no hidden columns case
+    CigarArray cig = new CigarArray(al, null, sg1);
     String result = cig.getCigarstring();
+    assertEquals(result, "22M");
+
+    cig = new CigarArray(al, hc, sg1);
+    result = cig.getCigarstring();
     assertEquals(result, "1M4D9M5D3M");
 
     // group starts at hidden cols