new SequenceI[]
{ new Sequence("refseqGaptest", "KTDVTI----------NFI-----G----L") });
HiddenColumns cs = new HiddenColumns();
- cs.hideInsertionsFor(al.getSequenceAt(0));
+ cs.hideInsertionsFor(al.getSequenceAt(0).getInsertions());
assertEquals("G", ""
+ al.getSequenceAt(0).getCharAt(cs.visibleToAbsoluteColumn(9)));
SequenceI seq1 = new Sequence("TEST1", "GAL---MFW-KQESPVICY--HRNDT");
SequenceI seq2 = new Sequence("TEST1", "GALMFWKQESPVICYHRNDT");
- h.hideInsertionsFor(seq2);
+ h.hideInsertionsFor(seq2.getInsertions());
assertTrue(h.equals(h2));
- h.hideInsertionsFor(seq1);
+ h.hideInsertionsFor(seq1.getInsertions());
h2.hideColumns(3, 5);
h2.hideColumns(9, 9);
h2.hideColumns(19, 20);