}
/**
+ * Test the method which counts the number of hidden columns
+ */
+ @Test(groups = { "Functional" })
+ public void testGetSize()
+ {
+ HiddenColumns hidden = new HiddenColumns();
+ assertEquals(0, hidden.getSize());
+
+ hidden.hideColumns(3, 5);
+ assertEquals(3, hidden.getSize());
+
+ hidden.hideColumns(8, 8);
+ assertEquals(4, hidden.getSize());
+
+ hidden.hideColumns(9, 14);
+ assertEquals(10, hidden.getSize());
+
+ ColumnSelection cs = new ColumnSelection();
+ hidden.revealAllHiddenColumns(cs);
+ assertEquals(0, hidden.getSize());
+ }
+
+ /**
* Test the method that finds the visible column position of an alignment
* column, allowing for hidden columns.
*/
HiddenColumns cs = new HiddenColumns();
cs.hideColumns(10, 11);
cs.hideColumns(5, 7);
- assertEquals("[5, 7]", Arrays.toString(cs.getListOfCols().get(0)));
+ assertEquals("[5, 7]", Arrays.toString(cs.getHiddenRegions().get(0)));
HiddenColumns cs2 = new HiddenColumns(cs);
assertTrue(cs2.hasHiddenColumns());
- assertEquals(2, cs2.getListOfCols().size());
+ assertEquals(2, cs2.getHiddenRegions().size());
// hidden columns are held in column order
- assertEquals("[5, 7]", Arrays.toString(cs2.getListOfCols().get(0)));
- assertEquals("[10, 11]", Arrays.toString(cs2.getListOfCols().get(1)));
+ assertEquals("[5, 7]", Arrays.toString(cs2.getHiddenRegions().get(0)));
+ assertEquals("[10, 11]", Arrays.toString(cs2.getHiddenRegions().get(1)));
}
/**
ColumnSelection colsel = new ColumnSelection();
HiddenColumns cs = al.getHiddenColumns();
colsel.hideSelectedColumns(5, al.getHiddenColumns());
- List<int[]> hidden = cs.getListOfCols();
+ List<int[]> hidden = cs.getHiddenRegions();
assertEquals(1, hidden.size());
assertEquals("[5, 5]", Arrays.toString(hidden.get(0)));
colsel.hideSelectedColumns(3, al.getHiddenColumns());
assertEquals(2, hidden.size());
// two hidden ranges, in order:
- assertSame(hidden, cs.getListOfCols());
+ assertSame(hidden, cs.getHiddenRegions());
assertEquals("[3, 3]", Arrays.toString(hidden.get(0)));
assertEquals("[5, 5]", Arrays.toString(hidden.get(1)));
// hiding column 4 expands [3, 3] to [3, 4]
// and merges to [5, 5] to make [3, 5]
colsel.hideSelectedColumns(4, al.getHiddenColumns());
- hidden = cs.getListOfCols();
+ hidden = cs.getHiddenRegions();
assertEquals(1, hidden.size());
assertEquals("[3, 5]", Arrays.toString(hidden.get(0)));
// clear hidden columns (note they are added to selected)
cs.revealAllHiddenColumns(colsel);
// it is now actually null but getter returns an empty list
- assertTrue(cs.getListOfCols().isEmpty());
+ assertTrue(cs.getHiddenRegions().isEmpty());
cs.hideColumns(3, 6);
- hidden = cs.getListOfCols();
+ hidden = cs.getHiddenRegions();
int[] firstHiddenRange = hidden.get(0);
assertEquals("[3, 6]", Arrays.toString(firstHiddenRange));
// adding a subrange of already hidden should do nothing
cs.hideColumns(4, 5);
assertEquals(1, hidden.size());
- assertSame(firstHiddenRange, cs.getListOfCols().get(0));
+ assertSame(firstHiddenRange, cs.getHiddenRegions().get(0));
cs.hideColumns(3, 5);
assertEquals(1, hidden.size());
- assertSame(firstHiddenRange, cs.getListOfCols().get(0));
+ assertSame(firstHiddenRange, cs.getHiddenRegions().get(0));
cs.hideColumns(4, 6);
assertEquals(1, hidden.size());
- assertSame(firstHiddenRange, cs.getListOfCols().get(0));
+ assertSame(firstHiddenRange, cs.getHiddenRegions().get(0));
cs.hideColumns(3, 6);
assertEquals(1, hidden.size());
- assertSame(firstHiddenRange, cs.getListOfCols().get(0));
+ assertSame(firstHiddenRange, cs.getHiddenRegions().get(0));
cs.revealAllHiddenColumns(colsel);
cs.hideColumns(2, 4);
- hidden = cs.getListOfCols();
+ hidden = cs.getHiddenRegions();
assertEquals(1, hidden.size());
assertEquals("[2, 4]", Arrays.toString(hidden.get(0)));
colsel.addElement(10);
cs.revealHiddenColumns(5, colsel);
// hidden columns list now null but getter returns empty list:
- assertTrue(cs.getListOfCols().isEmpty());
+ assertTrue(cs.getHiddenRegions().isEmpty());
// revealed columns are marked as selected (added to selection):
assertEquals("[10, 5, 6, 7, 8]", colsel.getSelected().toString());
colsel = new ColumnSelection();
cs = new HiddenColumns();
cs.hideColumns(5, 8);
- List<int[]> hidden = cs.getListOfCols();
+ List<int[]> hidden = cs.getHiddenRegions();
cs.revealHiddenColumns(6, colsel);
- assertSame(hidden, cs.getListOfCols());
+ assertSame(hidden, cs.getHiddenRegions());
assertTrue(colsel.getSelected().isEmpty());
}
* revealing hidden columns adds them (in order) to the (unordered)
* selection list
*/
- assertTrue(cs.getListOfCols().isEmpty());
+ assertTrue(cs.getHiddenRegions().isEmpty());
assertEquals("[11, 1, 2, 3, 5, 6, 7, 8]", colsel.getSelected()
.toString());
}
HiddenColumns cs = new HiddenColumns();
cs.hideColumns(49, 59);
cs.hideColumns(69, 79);
- List<int[]> hidden = cs.getListOfCols();
+ List<int[]> hidden = cs.getHiddenRegions();
assertEquals(2, hidden.size());
assertEquals("[49, 59]", Arrays.toString(hidden.get(0)));
assertEquals("[69, 79]", Arrays.toString(hidden.get(1)));
cs.hideColumns(48, 80);
- hidden = cs.getListOfCols();
+ hidden = cs.getHiddenRegions();
assertEquals(1, hidden.size());
assertEquals("[48, 80]", Arrays.toString(hidden.get(0)));
cs.hideColumns(50, 60);
// hiding 21-49 should merge to one range
cs.hideColumns(21, 49);
- hidden = cs.getListOfCols();
+ hidden = cs.getHiddenRegions();
assertEquals(1, hidden.size());
assertEquals("[10, 60]", Arrays.toString(hidden.get(0)));
cs.hideColumns(60, 70);
cs.hideColumns(15, 45);
- hidden = cs.getListOfCols();
+ hidden = cs.getHiddenRegions();
assertEquals(2, hidden.size());
assertEquals("[10, 50]", Arrays.toString(hidden.get(0)));
assertEquals("[60, 70]", Arrays.toString(hidden.get(1)));