+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
-import static org.testng.AssertJUnit.assertTrue;
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertFalse;
+import static org.testng.Assert.assertNotEquals;
+import static org.testng.Assert.assertNull;
+
+//import org.testng.Assert;
import org.testng.annotations.AfterMethod;
-import org.testng.annotations.Test;
import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
public class PDBEntryTest
{
- @BeforeMethod
+ @BeforeMethod(alwaysRun = true)
public void setUp() throws Exception
{
}
- @AfterMethod
+ @AfterMethod(alwaysRun = true)
public void tearDown() throws Exception
{
}
- @Test
- public void test()
+ @Test(groups = { "Functional" })
+ public void testEquals()
{
- try
- {
-
PDBEntry pdbEntry = new PDBEntry("1xyz", "A", PDBEntry.Type.PDB,
"x/y/z/File");
"x/y/z/File");
PDBEntry case7 = new PDBEntry("1xyz", "A", null, "x/y/z/File");
PDBEntry case8 = new PDBEntry("1xyz", "A", PDBEntry.Type.PDB, null);
- PDBEntry case9 = new PDBEntry("1xyz", "A", null, "x/y/z/File");
+ PDBEntry case9 = new PDBEntry("1xyz", "A", null, "x/y/z/File");
-
- // System.out.println(">>>> Testing case 1");
- assertTrue(pdbEntry.equals(case1));
- // System.out.println(">>>> Testing case 2");
- assertTrue(pdbEntry.equals(case2));
- // System.out.println(">>>> Testing case 3");
- assertTrue(!pdbEntry.equals(case3));
- // System.out.println(">>>> Testing case 4");
- assertTrue(!pdbEntry.equals(case4));
- // System.out.println(">>>> Testing case 5");
- assertTrue(!pdbEntry.equals(case5));
- // System.out.println(">>>> Testing case 6");
- assertTrue(!pdbEntry.equals(case6));
- // System.out.println(">>>> Testing case 7");
- assertTrue(!pdbEntry.equals(case7));
- // System.out.println(">>>> Testing case 8");
- assertTrue(pdbEntry.equals(case8));
- assertTrue(pdbEntry.equals(case8));
- assertTrue(case7.equals(case9));
- } catch (Exception e)
- {
- e.printStackTrace();
- }
+ /*
+ * assertions will invoke PDBEntry.equals()
+ */
+ assertFalse(pdbEntry.equals(null));
+ assertFalse(pdbEntry.equals("a"));
+ assertEquals(case1, pdbEntry);
+ assertEquals(case2, pdbEntry);
+ assertNotEquals(case3, pdbEntry);
+ assertNotEquals(case4, pdbEntry);
+ assertNotEquals(case5, pdbEntry);
+ assertNotEquals(case6, pdbEntry);
+ assertNotEquals(case7, pdbEntry);
+ assertEquals(case8, pdbEntry);
+ assertEquals(case7, case9);
+ /*
+ * change string wrapper property to string...
+ */
+ case1.setProperty("chain_code", "a");
+ assertFalse(pdbEntry.equals(case1));
+ assertFalse(case1.equals(pdbEntry));
}
+ @Test(groups = { "Functional" })
+ public void testSetChainCode()
+ {
+ PDBEntry pdbEntry = new PDBEntry("1xyz", null, PDBEntry.Type.PDB,
+ "x/y/z/File");
+ assertNull(pdbEntry.getChainCode());
+
+ pdbEntry.setChainCode("a");
+ assertEquals("a", pdbEntry.getChainCode());
+
+ pdbEntry.setChainCode(null);
+ assertNull(pdbEntry.getChainCode());
+ }
}