+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertFalse;
+import static org.testng.AssertJUnit.assertTrue;
import org.testng.annotations.Test;
public class SearchResultsTest
{
- @Test
+ @Test(groups = { "Functional" })
public void testToString()
{
SequenceI seq = new Sequence("", "abcdefghijklm");
SearchResults sr = new SearchResults();
sr.addResult(seq, 1, 1);
- assertEquals("a", sr.toString());
+ assertEquals("0a", sr.toString());
sr.addResult(seq, 3, 5);
- assertEquals("acde", sr.toString());
+ assertEquals("0a2cde", sr.toString());
seq = new Sequence("", "pqrstuvwxy");
sr.addResult(seq, 6, 7);
- assertEquals("acdeuv", sr.toString());
+ assertEquals("0a2cde5uv", sr.toString());
+ }
+
+ @Test(groups = { "Functional" })
+ public void testGetCharacters()
+ {
+ SequenceI seq = new Sequence("", "abcdefghijklm");
+ SearchResults sr = new SearchResults();
+ sr.addResult(seq, 1, 1);
+ assertEquals("a", sr.getCharacters());
+ sr.addResult(seq, 3, 5);
+ assertEquals("acde", sr.getCharacters());
+
+ seq = new Sequence("", "pqrstuvwxy");
+ sr.addResult(seq, 6, 7);
+ assertEquals("acdeuv", sr.getCharacters());
+ }
+
+ @Test(groups = { "Functional" })
+ public void testEquals()
+ {
+ SequenceI seq1 = new Sequence("", "abcdefghijklm");
+ SearchResults sr1 = new SearchResults();
+ SearchResults sr2 = new SearchResults();
+
+ assertFalse(sr1.equals(null)); // null object
+ assertFalse(sr1.equals(seq1)); // wrong type
+ assertTrue(sr1.equals(sr1)); // self
+ assertTrue(sr1.equals(sr2)); // empty
+ assertTrue(sr2.equals(sr1)); // reflexive
+
+ /*
+ * only one result is not empty
+ */
+ sr1.addResult(seq1, 1, 1);
+ assertTrue(sr1.equals(sr1));
+ assertFalse(sr1.equals(sr2));
+ assertFalse(sr2.equals(sr1));
+
+ /*
+ * both the same
+ */
+ sr2.addResult(seq1, 1, 1);
+ assertTrue(sr1.equals(sr2));
+ assertTrue(sr2.equals(sr1));
+
+ /*
+ * both have three matches
+ */
+ sr1.addResult(seq1, 3, 4);
+ sr1.addResult(seq1, 6, 8);
+ sr2.addResult(seq1, 3, 4);
+ sr2.addResult(seq1, 6, 8);
+ assertTrue(sr1.equals(sr1));
+ assertTrue(sr2.equals(sr2));
+ assertTrue(sr1.equals(sr2));
+ assertTrue(sr2.equals(sr1));
+ }
+
+ /**
+ * Matches that are similar but for distinct sequences are not equal
+ */
+ @Test(groups = { "Functional" })
+ public void testEquals_distinctSequences()
+ {
+ SequenceI seq1 = new Sequence("", "abcdefghijklm");
+ SequenceI seq2 = new Sequence("", "abcdefghijklm");
+ SearchResults sr1 = new SearchResults();
+ SearchResults sr2 = new SearchResults();
+
+ sr1.addResult(seq1, 1, 1);
+ sr2.addResult(seq2, 1, 1);
+ assertFalse(sr1.equals(sr2));
+ assertFalse(sr2.equals(sr1));
+ }
+
+ /**
+ * Matches that are the same except for ordering are not equal
+ */
+ @Test(groups = { "Functional" })
+ public void testEquals_orderDiffers()
+ {
+ SequenceI seq1 = new Sequence("", "abcdefghijklm");
+ SearchResults sr1 = new SearchResults();
+ SearchResults sr2 = new SearchResults();
+
+ sr1.addResult(seq1, 1, 1);
+ sr1.addResult(seq1, 2, 2);
+ sr2.addResult(seq1, 2, 2);
+ sr2.addResult(seq1, 1, 1);
+ assertFalse(sr1.equals(sr2));
+ assertFalse(sr2.equals(sr1));
+ }
+
+ /**
+ * Verify that hashCode matches for equal objects
+ */
+ @Test(groups = { "Functional" })
+ public void testHashcode()
+ {
+ SequenceI seq1 = new Sequence("", "abcdefghijklm");
+ SearchResults sr1 = new SearchResults();
+ SearchResults sr2 = new SearchResults();
+
+ /*
+ * both empty
+ */
+ assertEquals(sr1.hashCode(), sr2.hashCode());
+
+ /*
+ * both one match
+ */
+ sr1.addResult(seq1, 1, 1);
+ sr2.addResult(seq1, 1, 1);
+ assertEquals(sr1.hashCode(), sr2.hashCode());
+
+ /*
+ * both three matches
+ */
+ sr1.addResult(seq1, 3, 4);
+ sr1.addResult(seq1, 6, 8);
+ sr2.addResult(seq1, 3, 4);
+ sr2.addResult(seq1, 6, 8);
+ assertEquals(sr1.hashCode(), sr2.hashCode());
}
}